Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0493 ATGGATCGAAATACTGTCGGTGCCGGGGAATTCTGTGGTTCTGGTAATGGTAATGATTACGATCTCAGTGATGAAGTTCTTTCTTATTTATCAGATCCAAGTTTTGTTAGTAGTAAGATATTTAGCAGCACTTTTTCGAATCAAGATTATGGGAGTAATCCCCTTTCTGCAACCGATTTCGGCCGTTTGAGTTGTGAAAATTATCGTCCCATTCTGCCTATTGAAGTTCCTAGTGATGCAGCCTCGCCTTCTTTCGTGAATTGTGAGGAGGATTCGCAAGAAGATTGTGATTTTAGTGATGTGGTTCTTAAGTATATTAGCCAGATGCTTATGGAAGAAGATATAGAAGATAAGGCCTGCATGTTTCAGGAGTCTGCAGCATTGCAGGCTGCTGAGCAATCGTTTTATGAGCTTCTTGGGGAGCAGAATCCTCCAATTTCATCAGATCAATATTCTGAAAGTTCTGATAAAAATTGTACTTTGAGTCAGGCCAATTCTAATAGCACTTCAACCAGTTCAAGTAGTGGCAAAGCTTCTTACCCGGGTTCTCAGTCCACTTCAGATTCACTCTATAGCTCGTCCGGCAGTGGATACACTGGGGATTGGATTGTTGGTTCTCCGGTGAGCACCCTTAGAATTCCTGAAATACTTTCAGATGATGAGTCCGTTATGCAATTTCAAAGAGGTTTTGAAGAAGCAAGCAAGCTTATTCCTAATGATAATTTTCTGACAATTGATTTAGGAGGCAATAATCTAGTAAAAGAGCTGGAAAACGTGGCATTAACTGTTCCAAAGAATGAAAATGAGTCTTTCCTTGATGGTTTGAGGGGAAAGAAGAATCGTCTCCCTGAGGATGTAGATTTGGATGGAGGAAGGAGTAGTAAGCAGTCATCAATTTATACCGAGTCAACTGTGAGTTCAGAAATGTTTGATATGGTTCTGCTAAGCTGTGGGGCAAGTGAATCTGCTCTTCGTGAAGCATTGCAGAATGTGACAAGCCGGAACGTAGAGAAAAGTGCTCAGCCGAAGGGCACAAACAGTAACAAGAATCGTGGCAAGAAGAAGGGAAATAAGAGGGACATGGTGGATTTGAGAACTCTTTTAACACTTTGTGCACAATCTGTTGCAGCGAATGATCGGAGAAGTGCCAATGAGCAGCTAAAACAAATCAGACAGCATGCCGCTCCTACGGGAGATGGGATGCAGAGGATGGCTCATTATTTTGCTAATGGCCTGGAGGCACGCCTGGCTGGTTCCGGAACCAAAATCTACGCTGCTCTCGTAAACAAGCCAACATCTGCTGCAGATGTCTTGAAAGCTTATCATCTCTTCCTTGCAGCATGTCCTTTCCGAAAGCTTTCTAATTTCTTCTCAAATAAGACTATTATGAATGTTGCAGAGAAAGCAACAAGGGTCCACATAATTGATTTTGGTATTCTTTATGGTTTCCAGTGGCCTTGTCTTATACAGCGTCTCTCATCTAGGCCTGGCGGACCTCCTAAGATTCGTATGACTGCTATTGACTTTGCACAACCAGGTTTTCGACCAGCAGAAAGGGTTGAGGAGACTGGGCGTCGCCTAGCAAACTATGCGAAGACTTTTAACGTTCCATTCGAATTCAATGCAATAGCACAGAAGTGGGACACAGTCAAAATTGATGATCTTAAACTTAAAGATGGTGAGGTGGTTGTTGTGAACTGCTTATACAGATTCCGAAACCTACTTGATGAGACAGTGGTGGTAGATTGTCCTAGAGATACTGTTCTGAACCTAATAAAAAAAGTTAACCCAGATGTCTTTATACAGGGGGTTATCAATGGAGCATATAATGCACCCTTCTTTATCACACGGTTCCGAGAAGCCCTCTTCCACTTCTCTACATTGTACGATATGCTTGAGACTAATATACCTCGTGAGATTCCGGAAAGAATGCTTCTTGAGAGAGAGATATTTGGCTGGGAGGCAATGAATGTTATTGCTTGTGAGGGTTACGAGAGGATCGAGAGGCCAGAGACATATAAACAATGGCAGGTCAGGAACCACAGGATAGGGTTCAGGCAGCTACCTTTGAATGAAGAGATTGTAAAAATATCAAAGGACAGAGTGGAACAAGTTTACCATAAAGATTTTGTCATTGATCAAGATGGCGGGTGGTTGCTCCATGGGTGGAAAGGACGAATCACCTATGCTCTCTCTACCTGGAAGGCTGCTTAA 2214 42.68 MDRNTVGAGEFCGSGNGNDYDLSDEVLSYLSDPSFVSSKIFSSTFSNQDYGSNPLSATDFGRLSCENYRPILPIEVPSDAASPSFVNCEEDSQEDCDFSDVVLKYISQMLMEEDIEDKACMFQESAALQAAEQSFYELLGEQNPPISSDQYSESSDKNCTLSQANSNSTSTSSSSGKASYPGSQSTSDSLYSSSGSGYTGDWIVGSPVSTLRIPEILSDDESVMQFQRGFEEASKLIPNDNFLTIDLGGNNLVKELENVALTVPKNENESFLDGLRGKKNRLPEDVDLDGGRSSKQSSIYTESTVSSEMFDMVLLSCGASESALREALQNVTSRNVEKSAQPKGTNSNKNRGKKKGNKRDMVDLRTLLTLCAQSVAANDRRSANEQLKQIRQHAAPTGDGMQRMAHYFANGLEARLAGSGTKIYAALVNKPTSAADVLKAYHLFLAACPFRKLSNFFSNKTIMNVAEKATRVHIIDFGILYGFQWPCLIQRLSSRPGGPPKIRMTAIDFAQPGFRPAERVEETGRRLANYAKTFNVPFEFNAIAQKWDTVKIDDLKLKDGEVVVVNCLYRFRNLLDETVVVDCPRDTVLNLIKKVNPDVFIQGVINGAYNAPFFITRFREALFHFSTLYDMLETNIPREIPERMLLEREIFGWEAMNVIACEGYERIERPETYKQWQVRNHRIGFRQLPLNEEIVKISKDRVEQVYHKDFVIDQDGGWLLHGWKGRITYALSTWKAA 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3437958 3440171 + evm.model.ptg000021l.493 HCH13g0493 556998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0493 737 ProSiteProfiles GRAS family profile. 355 735 IPR005202 -
HCH13g0493 737 MobiDBLite consensus disorder prediction 141 192 - -
HCH13g0493 737 MobiDBLite consensus disorder prediction 270 300 - -
HCH13g0493 737 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 343 734 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH13g0493 737 Pfam GRAS domain family 364 735 IPR005202 -
HCH13g0493 737 MobiDBLite consensus disorder prediction 329 347 - -
HCH13g0493 737 MobiDBLite consensus disorder prediction 271 291 - -
HCH13g0493 737 MobiDBLite consensus disorder prediction 329 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0493 HCH-Chr13:3437958 HCH2g0668 HCH-Chr2:50476335 5.10E-60 dispersed
HCH11g0186 HCH-Chr11:1806500 HCH13g0493 HCH-Chr13:3437958 3.40E-192 wgd
HCH13g0493 HCH-Chr13:3437958 HCH2g1073 HCH-Chr2:53712534 7.20E-163 wgd
HCH13g0493 HCH-Chr13:3437958 HCH3g1373 HCH-Chr3:51501680 1.10E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32799 PF03514 GRAS 2.20E-114 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0493 K27753 - cit:102621708 886.33