Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0498 ATGAGTTTTGTTTTCCGTGGAACGAGAGCACCAGACATAGAAAGTGGTCTATCCGGATTCATATCCGAACGGCGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAATTCAAATTCACTTGCCTTTCTTGTCACAGTCCTGTTGTTGTTCATGATACTGAATTCTCACCAGATGTCACCTAACTTTCTGTTGTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTATGCAACTTGTCAACAACTTCAAGCTCAAGCCCAAGCTAGAGCTGTAGCAGCAAGCGGTCTTCTTGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCCACTAGAGGGCGTTTACAAGGGCTGAGGCTTCAACTTGCTCTACTTGATCGCGAATTTGACGATTTAGACTATGAAACTTTGAGAGCATTGGATTCTGATAACGTTCCTACAACCCCTTCTATGAGCGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTGCTGGTCCTCCAAGTGGCTCCTCTATAAGTCAACAGGCGTCGTCTTCAGAATCTACCGAGAAGAGACAAGATTCGGTTAATGCAGTTGGCGGTACAAAGAACTCAGAAGATGAACTGACTTGCAGTGTTTGCTTGGAGCAAGTAAACGTCGGTGAACTGATACGCAGTTTGCCGTGCTTGCACCAGTTCCATGCTAACTGCATCGATCCGTGGCTGCGACAGCAGGGAACATGCCCTGTTTGTAAATTCAGAGCAGTATCTGGGTGGCAGGAAGAACATGGACAAGGTGAATCCGATGCTTCTTATATGGTTTAA 834 45.32 MSFVFRGTRAPDIESGLSGFISERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAVAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVAGPPSGSSISQQASSSESTEKRQDSVNAVGGTKNSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWQEEHGQGESDASYMV 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3493643 3496073 - evm.model.ptg000021l.498 HCH13g0498 557003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0498 277 CDD RING-H2_PA-TM-RING 213 255 - -
HCH13g0498 277 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
HCH13g0498 277 MobiDBLite consensus disorder prediction 177 207 - -
HCH13g0498 277 SUPERFAMILY RING/U-box 208 258 - -
HCH13g0498 277 PANTHER TARGET OF ERK KINASE MPK-1 2 258 - GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
HCH13g0498 277 SMART ring_2 214 254 IPR001841 -
HCH13g0498 277 Pfam Ring finger domain 213 255 IPR001841 -
HCH13g0498 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 260 IPR013083 -
HCH13g0498 277 MobiDBLite consensus disorder prediction 174 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0498 HCH-Chr13:3493643 HCH2g1498 HCH-Chr2:56346278 9.10E-10 dispersed
HCH13g0498 HCH-Chr13:3493643 HCH6g1267 HCH-Chr6:46976968 1.10E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0498 K16283 - csv:101216306 459.144