Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0503 ATGGCAAATAGATGGTGGACTGGGAATCTTACAATGACAGGAGTAGACTCTATATCTTCATCTCCTTCCTTTACTCTAAGAAATACAGATCAAGAAGATCATCATAGTCCCCAAAACCCTAATTCCACCACCCCTCACAATCTTCAACAACAACAAATCTTTGAACATCAAGATCATAAATATGGTCGAGATCGCGATGATCCAGATGCAGAAGATCATCCCAACTCTGCCGGGGGCGGCCTGGGGAGTAGTCTAGAACTTGCTGGAAGGTCTAGTAAAAGTCACCGCCGTCCAAGAGGCCGTCCTCCTGGCTCCAAAAACAAACCAAAACCGCCCATTGTGATTACCAAAGACAGCCCCAATTCCCTCCGAAGCCATGTCTTGGAAATCAGCAGTGGCAGTGACATTGCTGATTGCATTTCCACCTTCGCCCAGCTTCGGCATCGGGGTGTGTCGATTCTCAGTGGGAGTGGCATGGTTACTAATGTCACTCTCCGGCAACCGGCTGCACCGGGCGGTGTTATAACTCTACATGAAACGTTTGAGATACTGTCATTATCTGGAGCTTTCTTACCGCCTCCATCGCCACCGGGTGCAACGGGGCTGACGGTGTATTTAGCAGGAGGGCAAGGGCAGGTAGTTGGTGGATTGGTGGCTGGTCCACTTATGGCTTCTGGGCCAGTTATAGTGATTGCAGCAACATTCACTAATGCAATATATGAAAGATTGCCTGTGGAGGATGAGACTGCAAGTGAGGATATGCAATTAGAGAAGCAATCTGCAAATTCTAATGGAAATTCAGCATCTCAAGCAAAGGAAGAATCAGTAATAGCAGCAGGAGAAGCAGGAGCTAGTTCTTTGCCAATATATAATTTGGTTCCAAATGGACAGATTTCTCATGGTTTGTTTTGGGCTCCTCTTCATCCTCGTCCTCCTCCATCTTATTAA 948 46.94 MANRWWTGNLTMTGVDSISSSPSFTLRNTDQEDHHSPQNPNSTTPHNLQQQQIFEHQDHKYGRDRDDPDAEDHPNSAGGGLGSSLELAGRSSKSHRRPRGRPPGSKNKPKPPIVITKDSPNSLRSHVLEISSGSDIADCISTFAQLRHRGVSILSGSGMVTNVTLRQPAAPGGVITLHETFEILSLSGAFLPPPSPPGATGLTVYLAGGQGQVVGGLVAGPLMASGPVIVIAATFTNAIYERLPVEDETASEDMQLEKQSANSNGNSASQAKEESVIAAGEAGASSLPIYNLVPNGQISHGLFWAPLHPRPPPSY 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3538028 3538975 - evm.model.ptg000021l.503 HCH13g0503 557008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0503 315 Gene3D - 123 264 - -
HCH13g0503 315 MobiDBLite consensus disorder prediction 56 73 - -
HCH13g0503 315 MobiDBLite consensus disorder prediction 255 273 - -
HCH13g0503 315 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 52 311 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH13g0503 315 FunFam AT-hook motif nuclear-localized protein 123 250 - -
HCH13g0503 315 ProSiteProfiles PPC domain profile profile. 120 257 IPR005175 -
HCH13g0503 315 MobiDBLite consensus disorder prediction 1 27 - -
HCH13g0503 315 Pfam Plants and Prokaryotes Conserved (PCC) domain 124 236 IPR005175 -
HCH13g0503 315 MobiDBLite consensus disorder prediction 35 55 - -
HCH13g0503 315 CDD DUF296 124 235 IPR005175 -
HCH13g0503 315 SUPERFAMILY AF0104/ALDC/Ptd012-like 120 248 - -
HCH13g0503 315 PIRSF ESCAROLA 28 312 IPR014476 GO:0003680(InterPro)
HCH13g0503 315 MobiDBLite consensus disorder prediction 1 120 - -
HCH13g0503 315 MobiDBLite consensus disorder prediction 250 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0503 HCH-Chr13:3538028 HCH7g1306 HCH-Chr7:46002643 8.60E-65 dispersed
HCH1g0439 HCH-Chr1:52797627 HCH13g0503 HCH-Chr13:3538028 6.30E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0503 - - - 0.0