Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0506 ATGGCGGACACTTGCTTTGTTGAAGACGGTGAACCTTCAGCTTCATCTAAACGTCGTCCTCGAACTTCCAGACGTCTGAAAATGGATTTTCTTGAACTCCATTCCATCGCCGATGTCCCGCCAAACGAATCCAAACGTAGTAAAGTCCATATCTACCATCGTGATTGCCATAACGCTGATGAAAATAGCCTCCAGAATGAAAAACGGGAAGCTCCTTTTCCGGTGCCGGCGAGGGCGTGGCCTAAATATGGGGTGACGTCAGTTTGTGGAAGGAGGAGAGATATGGAGGATGCTGTCTCAATTCATCCCTCGTTTTGTTGTTGGAAGAATCAGAATCAAAACCTTAATGATGTTCACTTTTTTGGTGTTTTTGATGGACACGGTTGTTGTCATGTGGCGAAGAGCTGTGAGAATAGAATGCATGAAATTTTGAAGGAAGAGATTGAAAATGAATTAGAAGAATTATCGATGGTGGATTGGAAGAAGATGATGCAAGGAAGCTTTGAACGTATGGATGATGAAGTGAAAGAGTATCGTTATGATAGCAGTAATGGAAGTTCTTCCATTAATTGTAGGTGTGAACTCCAAACTCCTCAACAATACGACATGGTCGGATCTACAGCGCTCGTCTCCGTTCTAACGCCGGATAAAATAATTACTTCTAACTGTGGTGATTCTCGCGCCGTGCTTTGGCGGAAAGGCGCCGTCGTACCGTTGTCATCTGATCATAAGCCCGATCGACCAGACGAATTGGTCCGAATAGAATCTGCGGGCGGGCGTGTGATGTATTGGGACGGTCCAAGAGTGCTTGGAGTATTAGCCATGTCGAGAGCAATAGGAGACCAATATCTAAAACCGTTCGTGATCGCGGAGCCGGAGGTGATGATAACGGAACGGACGGCGGAGGATGAATTTATGATACTAGCAAGCGATGGTCTGTGGGACGTGATTTCAAACGACGCTGCATGCGGGGCAGTACGAATGTGCATGCGGGCGCAGGACTCGGCTGCTGCGGGATCGATGGCCGGCAGTAATTCCGACAAGACATGCTGGGACGCGTCCATTTTGCTGATGAAATTGGCAATGACGAGACATAGCTCAGACAACATTAGTGTTGTTGTTGTGGATTTGAGAAAGGATCATCATCATCAAACTGATAATAGAGTTGAGTGA 1173 46.63 MADTCFVEDGEPSASSKRRPRTSRRLKMDFLELHSIADVPPNESKRSKVHIYHRDCHNADENSLQNEKREAPFPVPARAWPKYGVTSVCGRRRDMEDAVSIHPSFCCWKNQNQNLNDVHFFGVFDGHGCCHVAKSCENRMHEILKEEIENELEELSMVDWKKMMQGSFERMDDEVKEYRYDSSNGSSSINCRCELQTPQQYDMVGSTALVSVLTPDKIITSNCGDSRAVLWRKGAVVPLSSDHKPDRPDELVRIESAGGRVMYWDGPRVLGVLAMSRAIGDQYLKPFVIAEPEVMITERTAEDEFMILASDGLWDVISNDAACGAVRMCMRAQDSAAAGSMAGSNSDKTCWDASILLMKLAMTRHSSDNISVVVVDLRKDHHHQTDNRVE 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3551931 3553676 + evm.model.ptg000021l.506 HCH13g0506 557011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0506 390 PANTHER PROTEIN PHOSPHATASE 59 376 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH13g0506 390 Pfam Protein phosphatase 2C 83 369 IPR001932 -
HCH13g0506 390 Coils Coil 138 158 - -
HCH13g0506 390 SMART PP2C_4 72 375 IPR001932 -
HCH13g0506 390 SUPERFAMILY PP2C-like 74 378 IPR036457 -
HCH13g0506 390 MobiDBLite consensus disorder prediction 1 23 - -
HCH13g0506 390 Gene3D - 77 386 IPR036457 -
HCH13g0506 390 CDD PP2Cc 82 377 IPR001932 -
HCH13g0506 390 ProSitePatterns PPM-type phosphatase domain signature. 120 128 IPR000222 GO:0043169(InterPro)
HCH13g0506 390 ProSiteProfiles PPM-type phosphatase domain profile. 82 377 IPR001932 -
HCH13g0506 390 FunFam Protein phosphatase 2C 50 80 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1169 HCH-Chr11:43866811 HCH13g0506 HCH-Chr13:3551931 4.60E-69 dispersed
HCH11g1305 HCH-Chr11:45052792 HCH13g0506 HCH-Chr13:3551931 1.00E-64 dispersed
HCH13g0506 HCH-Chr13:3551931 HCH4g0520 HCH-Chr4:3411272 1.10E-58 dispersed
HCH13g0506 HCH-Chr13:3551931 HCH3g1399 HCH-Chr3:51941522 2.10E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0506 K14497 - gmx:100796161 401.364