Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g0506 | ATGGCGGACACTTGCTTTGTTGAAGACGGTGAACCTTCAGCTTCATCTAAACGTCGTCCTCGAACTTCCAGACGTCTGAAAATGGATTTTCTTGAACTCCATTCCATCGCCGATGTCCCGCCAAACGAATCCAAACGTAGTAAAGTCCATATCTACCATCGTGATTGCCATAACGCTGATGAAAATAGCCTCCAGAATGAAAAACGGGAAGCTCCTTTTCCGGTGCCGGCGAGGGCGTGGCCTAAATATGGGGTGACGTCAGTTTGTGGAAGGAGGAGAGATATGGAGGATGCTGTCTCAATTCATCCCTCGTTTTGTTGTTGGAAGAATCAGAATCAAAACCTTAATGATGTTCACTTTTTTGGTGTTTTTGATGGACACGGTTGTTGTCATGTGGCGAAGAGCTGTGAGAATAGAATGCATGAAATTTTGAAGGAAGAGATTGAAAATGAATTAGAAGAATTATCGATGGTGGATTGGAAGAAGATGATGCAAGGAAGCTTTGAACGTATGGATGATGAAGTGAAAGAGTATCGTTATGATAGCAGTAATGGAAGTTCTTCCATTAATTGTAGGTGTGAACTCCAAACTCCTCAACAATACGACATGGTCGGATCTACAGCGCTCGTCTCCGTTCTAACGCCGGATAAAATAATTACTTCTAACTGTGGTGATTCTCGCGCCGTGCTTTGGCGGAAAGGCGCCGTCGTACCGTTGTCATCTGATCATAAGCCCGATCGACCAGACGAATTGGTCCGAATAGAATCTGCGGGCGGGCGTGTGATGTATTGGGACGGTCCAAGAGTGCTTGGAGTATTAGCCATGTCGAGAGCAATAGGAGACCAATATCTAAAACCGTTCGTGATCGCGGAGCCGGAGGTGATGATAACGGAACGGACGGCGGAGGATGAATTTATGATACTAGCAAGCGATGGTCTGTGGGACGTGATTTCAAACGACGCTGCATGCGGGGCAGTACGAATGTGCATGCGGGCGCAGGACTCGGCTGCTGCGGGATCGATGGCCGGCAGTAATTCCGACAAGACATGCTGGGACGCGTCCATTTTGCTGATGAAATTGGCAATGACGAGACATAGCTCAGACAACATTAGTGTTGTTGTTGTGGATTTGAGAAAGGATCATCATCATCAAACTGATAATAGAGTTGAGTGA | 1173 | 46.63 | MADTCFVEDGEPSASSKRRPRTSRRLKMDFLELHSIADVPPNESKRSKVHIYHRDCHNADENSLQNEKREAPFPVPARAWPKYGVTSVCGRRRDMEDAVSIHPSFCCWKNQNQNLNDVHFFGVFDGHGCCHVAKSCENRMHEILKEEIENELEELSMVDWKKMMQGSFERMDDEVKEYRYDSSNGSSSINCRCELQTPQQYDMVGSTALVSVLTPDKIITSNCGDSRAVLWRKGAVVPLSSDHKPDRPDELVRIESAGGRVMYWDGPRVLGVLAMSRAIGDQYLKPFVIAEPEVMITERTAEDEFMILASDGLWDVISNDAACGAVRMCMRAQDSAAAGSMAGSNSDKTCWDASILLMKLAMTRHSSDNISVVVVDLRKDHHHQTDNRVE | 390 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 3551931 | 3553676 | + | evm.model.ptg000021l.506 | HCH13g0506 | 557011 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g0506 | 390 | PANTHER | PROTEIN PHOSPHATASE | 59 | 376 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
HCH13g0506 | 390 | Pfam | Protein phosphatase 2C | 83 | 369 | IPR001932 | - | |
HCH13g0506 | 390 | Coils | Coil | 138 | 158 | - | - | |
HCH13g0506 | 390 | SMART | PP2C_4 | 72 | 375 | IPR001932 | - | |
HCH13g0506 | 390 | SUPERFAMILY | PP2C-like | 74 | 378 | IPR036457 | - | |
HCH13g0506 | 390 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
HCH13g0506 | 390 | Gene3D | - | 77 | 386 | IPR036457 | - | |
HCH13g0506 | 390 | CDD | PP2Cc | 82 | 377 | IPR001932 | - | |
HCH13g0506 | 390 | ProSitePatterns | PPM-type phosphatase domain signature. | 120 | 128 | IPR000222 | GO:0043169(InterPro) | |
HCH13g0506 | 390 | ProSiteProfiles | PPM-type phosphatase domain profile. | 82 | 377 | IPR001932 | - | |
HCH13g0506 | 390 | FunFam | Protein phosphatase 2C 50 | 80 | 385 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g1169 | HCH-Chr11:43866811 | HCH13g0506 | HCH-Chr13:3551931 | 4.60E-69 | dispersed | |
HCH11g1305 | HCH-Chr11:45052792 | HCH13g0506 | HCH-Chr13:3551931 | 1.00E-64 | dispersed | |
HCH13g0506 | HCH-Chr13:3551931 | HCH4g0520 | HCH-Chr4:3411272 | 1.10E-58 | dispersed | |
HCH13g0506 | HCH-Chr13:3551931 | HCH3g1399 | HCH-Chr3:51941522 | 2.10E-97 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g0506 | K14497 | - | gmx:100796161 | 401.364 |