Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g0508 | ATGGAATCCACTCTCCGCATCCGCCTCCTCTTCCTCCTTACGGCGGCGTTTAATATCGCAGCCTCCGCAATCCGCCGTTGTCCGGACTGCGGTGCCACCACTGTACCCTATCCTCTAAGCACTGGCCCCGACTGCGGGGACCAGTCCTATAAAATCACGTGCAACGCAGGTGCTCTCAAATTCAACACACTCAATAACACATATCCCATCACCTCCATCAATCCCGCCATCCAACGGCTCGTGATCCAGCCCTCGGATCTCGTGCCGAACAGGTGCGTGACCTCAGATATTCTCCATGACGGTATTAAACTCAACAGCAGCTTACCCTTTAACGTCACGAGCAGTAACACGATCCTCTACTTCAATTGCACCGATTCGCTCCTCCGCTCGCCGTTGAACTGCTCGTCTGCGAGTCTGTGCCAAAGTTACATCAACGGCAAGCGCAACGGCGGCGTTGCGGCGTGCGAGGCCGCGCCCTTGTGTTGTACGTTCCGCGCCGGCGGGTCGTCGAATTCGTATATGATTAGGGTGCGGGACTCGGGTTGTAGCGCGTACACGAGTTTTGTGAATTTGAACCCGGTCCTGCCGCTGGACCGGTGGCCGGAACCCGGGTTGGAATTGCAGTGGCTGCCACCGCGGGAACCGAAGTGTGTGACGCAGGGGGACTGTGACAGGAACGCCGTGTGCGGCGGCGATCCGGGTGAGGTGGGAGTGAGGAGGTGTTTTTGTAATTCTGGATTTGTGTGGGACGCGGTGGTCGGCGTTTGCTCGGAAAATACGTGTCAAGATCCTAATGGTTGCAAAACGTCTCGGACTGCATTAATTGCTGGCTTAACAACCGGGATTGGCTCCTCGCTCATCTTCGCAACAATTGCCTTTTTTGTATACAAACGCCACAGGCGAGCCAAAGAAGCTCGAGAACGTTTAACTAGAGAGCGTGAAGAGATTTTGAACTCCAATGGAGGAGTTGGAAGAGCTGCAAAGCTCTTCACCGGAAAAGAGATAAAGAGAGCCACCAACAACTTCTCTATGGACCGCCTTCTCGGTGTCGGTGGCTACGGTGAGGTTTATAAAGGCGTTATCGGAGACGGCACCACGGTCGCCGTGAAATGCGCCAAGCTTGGAAATACTAAAGGCACAGACCAAGTGCTGAATGAGGTTAGAATTCTTTGTCAAGTTAATCACCGGAGCCTTGTCCGGCTCCTTGGTTGCTGTGTGGAGTTGGAGCAGCCAATTCTAGTCTATGAGTATATTCCTAATGGCACTCTTCTCGACCGTTTACAAGACCACCAGGGATTCAACGGACTATTGTGGGATCAGCGGCTCCGAATCGCCCACGGCACGGCGGAGGGTTTAGCGTACCTTCATTTCTCAGCAGTTCCGCCTATCTATCACCGAGACGTGAAATCCAGTAACATCCTTCTAAATGAGAAACTGAGTCCGAAAGTATCCGATTTCGGGTTATCGAGATTGGCCGAGACGGATTTAAGCCACATCTCAACATGTGCCCAAGGAACATTAGGTTATTTGGACCCAGAATACTACAGAAACTACCAACTAACCGATAAGAGTGACGTTTATAGTTTCGGAGTAGTATTGCTAGAGCTATTAACATCCCAGAAAGCAATAGACTTCAAAAGGGAACCAGATGACGTGAACTTAGCAGTTTATGTGCAAAGAATGGTGGAAGAAGAGAAGTTGGTTGATGTGATTGATCCAAAGCTGAAGAAAGGAGCGAGTGATATGGAAGTGGAGACGATGAAGGCATTGGGTTTTCTTGCATTGGGTTGCTTAGAAGAAAAAAGACAGAATCGACCTTCCATGAAAGAAGTGGTGGAAGAAATTGATTACATTATTAGTGTTGCCACCGCCAAGGACGAAGAGAAGTAA | 1890 | 50.79 | MESTLRIRLLFLLTAAFNIAASAIRRCPDCGATTVPYPLSTGPDCGDQSYKITCNAGALKFNTLNNTYPITSINPAIQRLVIQPSDLVPNRCVTSDILHDGIKLNSSLPFNVTSSNTILYFNCTDSLLRSPLNCSSASLCQSYINGKRNGGVAACEAAPLCCTFRAGGSSNSYMIRVRDSGCSAYTSFVNLNPVLPLDRWPEPGLELQWLPPREPKCVTQGDCDRNAVCGGDPGEVGVRRCFCNSGFVWDAVVGVCSENTCQDPNGCKTSRTALIAGLTTGIGSSLIFATIAFFVYKRHRRAKEARERLTREREEILNSNGGVGRAAKLFTGKEIKRATNNFSMDRLLGVGGYGEVYKGVIGDGTTVAVKCAKLGNTKGTDQVLNEVRILCQVNHRSLVRLLGCCVELEQPILVYEYIPNGTLLDRLQDHQGFNGLLWDQRLRIAHGTAEGLAYLHFSAVPPIYHRDVKSSNILLNEKLSPKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFKREPDDVNLAVYVQRMVEEEKLVDVIDPKLKKGASDMEVETMKALGFLALGCLEEKRQNRPSMKEVVEEIDYIISVATAKDEEK | 629 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 3565441 | 3568801 | + | evm.model.ptg000021l.508 | HCH13g0508 | 557013 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g0508 | 629 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 463 | 475 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH13g0508 | 629 | Gene3D | Transferase(Phosphotransferase) domain 1 | 418 | 629 | - | - | |
HCH13g0508 | 629 | PANTHER | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 | 25 | 618 | IPR044652 | GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER) | |
HCH13g0508 | 629 | Gene3D | Phosphorylase Kinase; domain 1 | 316 | 417 | - | - | |
HCH13g0508 | 629 | ProSitePatterns | Protein kinases ATP-binding region signature. | 348 | 370 | IPR017441 | GO:0005524(InterPro) | |
HCH13g0508 | 629 | Coils | Coil | 299 | 319 | - | - | |
HCH13g0508 | 629 | Pfam | Protein tyrosine and serine/threonine kinase | 344 | 615 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH13g0508 | 629 | FunFam | Wall-associated receptor kinase-like 20 | 418 | 628 | - | - | |
HCH13g0508 | 629 | Pfam | Wall-associated receptor kinase galacturonan-binding | 27 | 82 | IPR025287 | GO:0030247(InterPro) | |
HCH13g0508 | 629 | CDD | STKc_IRAK | 348 | 616 | - | - | |
HCH13g0508 | 629 | FunFam | Wall-associated receptor kinase-like 20 | 303 | 417 | - | - | |
HCH13g0508 | 629 | SUPERFAMILY | Protein kinase-like (PK-like) | 327 | 614 | IPR011009 | - | |
HCH13g0508 | 629 | SMART | serkin_6 | 342 | 618 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH13g0508 | 629 | ProSiteProfiles | Protein kinase domain profile. | 342 | 618 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0350 | HCH-Chr11:3330514 | HCH13g0508 | HCH-Chr13:3565441 | 1.30E-163 | dispersed | |
HCH13g0508 | HCH-Chr13:3565441 | HCH8g0249 | HCH-Chr8:12087070 | 1.80E-77 | dispersed | |
HCH10g0330 | HCH-Chr10:2684514 | HCH13g0508 | HCH-Chr13:3565441 | 4.90E-88 | transposed | |
HCH3g0892 | HCH-Chr3:7487621 | HCH13g0508 | HCH-Chr13:3565441 | 4.90E-20 | transposed | |
HCH9g0700 | HCH-Chr9:4662945 | HCH13g0508 | HCH-Chr13:3565441 | 2.00E-13 | transposed | |
HCH13g0508 | HCH-Chr13:3565441 | HCH9g0699 | HCH-Chr9:4661214 | 1.10E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81168 | PF07714 | PK_Tyr_Ser-Thr | 1.40E-44 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g0508 | - | - | - | 0.0 |