Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0508 ATGGAATCCACTCTCCGCATCCGCCTCCTCTTCCTCCTTACGGCGGCGTTTAATATCGCAGCCTCCGCAATCCGCCGTTGTCCGGACTGCGGTGCCACCACTGTACCCTATCCTCTAAGCACTGGCCCCGACTGCGGGGACCAGTCCTATAAAATCACGTGCAACGCAGGTGCTCTCAAATTCAACACACTCAATAACACATATCCCATCACCTCCATCAATCCCGCCATCCAACGGCTCGTGATCCAGCCCTCGGATCTCGTGCCGAACAGGTGCGTGACCTCAGATATTCTCCATGACGGTATTAAACTCAACAGCAGCTTACCCTTTAACGTCACGAGCAGTAACACGATCCTCTACTTCAATTGCACCGATTCGCTCCTCCGCTCGCCGTTGAACTGCTCGTCTGCGAGTCTGTGCCAAAGTTACATCAACGGCAAGCGCAACGGCGGCGTTGCGGCGTGCGAGGCCGCGCCCTTGTGTTGTACGTTCCGCGCCGGCGGGTCGTCGAATTCGTATATGATTAGGGTGCGGGACTCGGGTTGTAGCGCGTACACGAGTTTTGTGAATTTGAACCCGGTCCTGCCGCTGGACCGGTGGCCGGAACCCGGGTTGGAATTGCAGTGGCTGCCACCGCGGGAACCGAAGTGTGTGACGCAGGGGGACTGTGACAGGAACGCCGTGTGCGGCGGCGATCCGGGTGAGGTGGGAGTGAGGAGGTGTTTTTGTAATTCTGGATTTGTGTGGGACGCGGTGGTCGGCGTTTGCTCGGAAAATACGTGTCAAGATCCTAATGGTTGCAAAACGTCTCGGACTGCATTAATTGCTGGCTTAACAACCGGGATTGGCTCCTCGCTCATCTTCGCAACAATTGCCTTTTTTGTATACAAACGCCACAGGCGAGCCAAAGAAGCTCGAGAACGTTTAACTAGAGAGCGTGAAGAGATTTTGAACTCCAATGGAGGAGTTGGAAGAGCTGCAAAGCTCTTCACCGGAAAAGAGATAAAGAGAGCCACCAACAACTTCTCTATGGACCGCCTTCTCGGTGTCGGTGGCTACGGTGAGGTTTATAAAGGCGTTATCGGAGACGGCACCACGGTCGCCGTGAAATGCGCCAAGCTTGGAAATACTAAAGGCACAGACCAAGTGCTGAATGAGGTTAGAATTCTTTGTCAAGTTAATCACCGGAGCCTTGTCCGGCTCCTTGGTTGCTGTGTGGAGTTGGAGCAGCCAATTCTAGTCTATGAGTATATTCCTAATGGCACTCTTCTCGACCGTTTACAAGACCACCAGGGATTCAACGGACTATTGTGGGATCAGCGGCTCCGAATCGCCCACGGCACGGCGGAGGGTTTAGCGTACCTTCATTTCTCAGCAGTTCCGCCTATCTATCACCGAGACGTGAAATCCAGTAACATCCTTCTAAATGAGAAACTGAGTCCGAAAGTATCCGATTTCGGGTTATCGAGATTGGCCGAGACGGATTTAAGCCACATCTCAACATGTGCCCAAGGAACATTAGGTTATTTGGACCCAGAATACTACAGAAACTACCAACTAACCGATAAGAGTGACGTTTATAGTTTCGGAGTAGTATTGCTAGAGCTATTAACATCCCAGAAAGCAATAGACTTCAAAAGGGAACCAGATGACGTGAACTTAGCAGTTTATGTGCAAAGAATGGTGGAAGAAGAGAAGTTGGTTGATGTGATTGATCCAAAGCTGAAGAAAGGAGCGAGTGATATGGAAGTGGAGACGATGAAGGCATTGGGTTTTCTTGCATTGGGTTGCTTAGAAGAAAAAAGACAGAATCGACCTTCCATGAAAGAAGTGGTGGAAGAAATTGATTACATTATTAGTGTTGCCACCGCCAAGGACGAAGAGAAGTAA 1890 50.79 MESTLRIRLLFLLTAAFNIAASAIRRCPDCGATTVPYPLSTGPDCGDQSYKITCNAGALKFNTLNNTYPITSINPAIQRLVIQPSDLVPNRCVTSDILHDGIKLNSSLPFNVTSSNTILYFNCTDSLLRSPLNCSSASLCQSYINGKRNGGVAACEAAPLCCTFRAGGSSNSYMIRVRDSGCSAYTSFVNLNPVLPLDRWPEPGLELQWLPPREPKCVTQGDCDRNAVCGGDPGEVGVRRCFCNSGFVWDAVVGVCSENTCQDPNGCKTSRTALIAGLTTGIGSSLIFATIAFFVYKRHRRAKEARERLTREREEILNSNGGVGRAAKLFTGKEIKRATNNFSMDRLLGVGGYGEVYKGVIGDGTTVAVKCAKLGNTKGTDQVLNEVRILCQVNHRSLVRLLGCCVELEQPILVYEYIPNGTLLDRLQDHQGFNGLLWDQRLRIAHGTAEGLAYLHFSAVPPIYHRDVKSSNILLNEKLSPKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFKREPDDVNLAVYVQRMVEEEKLVDVIDPKLKKGASDMEVETMKALGFLALGCLEEKRQNRPSMKEVVEEIDYIISVATAKDEEK 629
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 3565441 3568801 + evm.model.ptg000021l.508 HCH13g0508 557013
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0508 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0508 629 Gene3D Transferase(Phosphotransferase) domain 1 418 629 - -
HCH13g0508 629 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 25 618 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
HCH13g0508 629 Gene3D Phosphorylase Kinase; domain 1 316 417 - -
HCH13g0508 629 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524(InterPro)
HCH13g0508 629 Coils Coil 299 319 - -
HCH13g0508 629 Pfam Protein tyrosine and serine/threonine kinase 344 615 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0508 629 FunFam Wall-associated receptor kinase-like 20 418 628 - -
HCH13g0508 629 Pfam Wall-associated receptor kinase galacturonan-binding 27 82 IPR025287 GO:0030247(InterPro)
HCH13g0508 629 CDD STKc_IRAK 348 616 - -
HCH13g0508 629 FunFam Wall-associated receptor kinase-like 20 303 417 - -
HCH13g0508 629 SUPERFAMILY Protein kinase-like (PK-like) 327 614 IPR011009 -
HCH13g0508 629 SMART serkin_6 342 618 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0508 629 ProSiteProfiles Protein kinase domain profile. 342 618 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0350 HCH-Chr11:3330514 HCH13g0508 HCH-Chr13:3565441 1.30E-163 dispersed
HCH13g0508 HCH-Chr13:3565441 HCH8g0249 HCH-Chr8:12087070 1.80E-77 dispersed
HCH10g0330 HCH-Chr10:2684514 HCH13g0508 HCH-Chr13:3565441 4.90E-88 transposed
HCH3g0892 HCH-Chr3:7487621 HCH13g0508 HCH-Chr13:3565441 4.90E-20 transposed
HCH9g0700 HCH-Chr9:4662945 HCH13g0508 HCH-Chr13:3565441 2.00E-13 transposed
HCH13g0508 HCH-Chr13:3565441 HCH9g0699 HCH-Chr9:4661214 1.10E-66 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81168 PF07714 PK_Tyr_Ser-Thr 1.40E-44 CL0016 HCH PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0508 - - - 0.0