Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g0528 | ATGGCGACAATAAACGACTCCCACGTTGTCAGTGTGGAGGAACAAGTAGTGTCTCGCCGGAATTCCAGTTCCGGCAGTGGCACTGAGATTGAAGTTTCCGACAAGAGAAGGGAAATGGATCTGGAATGTGGGTTAGCTGAAATTAAGGTACATTTGTCTAAAATAGAAAGGGATTGTCGGATTTGTCATTTGAGTTTGGATTCTTCAAATCATGAATCTGGAAATGGAAATGGAATCCCCATTGAACTTGGTTGTTCTTGTAAGGAAGATTTAGCTGCTGCTCATAAACACTGTGCTGAAGCTTGGTTCAAGATTAAGGGTGATATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTCACTGGTGCTTATGAAGCCGACTCAATAGAGCAGCGGAACGAGTCGAATGATGCGACGACAACAACAGCTGCTACCGCCACCACGACACCCCCAAACTCCACTGAAACTCGAAACTTCTGGCAGGGCCATAGATTCCTGAATTTCTTACTAGCCTGCATGGTTTTCGCCTTCGTCATTTCTTGGCTATTTCACTTCAACATACCCTCATAA | 573 | 44.5 | MATINDSHVVSVEEQVVSRRNSSSGSGTEIEVSDKRREMDLECGLAEIKVHLSKIERDCRICHLSLDSSNHESGNGNGIPIELGCSCKEDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGAYEADSIEQRNESNDATTTTAATATTTPPNSTETRNFWQGHRFLNFLLACMVFAFVISWLFHFNIPS | 190 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 3682607 | 3684555 | - | evm.model.ptg000021l.528 | HCH13g0528 | 557033 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g0528 | 190 | PANTHER | ZINC FINGER, RING-CH-TYPE | 31 | 189 | - | - | |
| HCH13g0528 | 190 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 124 | IPR013083 | - | |
| HCH13g0528 | 190 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 51 | 121 | IPR011016 | GO:0008270(InterPro) | |
| HCH13g0528 | 190 | SMART | ringv_2 | 58 | 115 | IPR011016 | GO:0008270(InterPro) | |
| HCH13g0528 | 190 | SUPERFAMILY | RING/U-box | 56 | 117 | - | - | |
| HCH13g0528 | 190 | MobiDBLite | consensus disorder prediction | 133 | 155 | - | - | |
| HCH13g0528 | 190 | Pfam | RING-variant domain | 59 | 114 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g0528 | HCH-Chr13:3682607 | HCH14g0997 | HCH-Chr14:37297334 | 5.20E-25 | dispersed | |
| HCH14g0085 | HCH-Chr14:14960463 | HCH13g0528 | HCH-Chr13:3682607 | 1.00E-08 | transposed | |
| HCH11g0131 | HCH-Chr11:1452770 | HCH13g0528 | HCH-Chr13:3682607 | 5.20E-51 | wgd | |
| HCH13g0528 | HCH-Chr13:3682607 | HCH3g1416 | HCH-Chr3:52104041 | 1.90E-35 | wgd | |
| HCH13g0528 | HCH-Chr13:3682607 | HCH9g0739 | HCH-Chr9:4955685 | 9.90E-40 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g0528 | - | - | - | 0.0 |