Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0530 ATGACAAAGTTCAAGGATAGGACAGAAGATTTTAAAGATGCTGTGCGGCAGTGTGCTATTTCTTTAGAGTATAGCGAGTCCAAATTGGCGGCAATCATGGCATCTTTCATCATTCAGAAGCCTCGACAAAGGTCACCATTTGTCAAAGCTGCCCTAAAAACGCTTGAAAGTATTGGAGCTTTGGAAGAGTTTATGTTGAAACATCGTAAGGATTACGTAGATATGTATCGCACAACAGATCAGGAGAGAGACAACATTGAACATGAGGTAACTGCCTTCATCAAAGCATGTCAGGAACAAATTGATATCCTTAAAAACAGTATTAACGAGGATGAAGCACACTCAAAGGGCTGGCTTGGCATCAAGACTGATAGTGCTAGTGCCGATGCTATTGCCCACAAACATGGGGTGGTACTGATTTTGAGTGAGAGACTCCACTCAGTAACATCACAATTTGATAAGCTAAGAGCCCTTCGGTTTCAAGATATCATTAACAAAGCAATACCAAGAAGAAAACCCGGCCAAGTAACTAAGCATCGTTCTGCAGATACCCCGGAATATAACAATTCAGAGCCGAGGGAACTTGATAACTTTCAGCATGAACCTGTGCGAGTCCAACAGCAATTGTTGGATGATGAAACTCGTGCACTTCAGGTTGAGTTGACTACTCTTCTCGATGCAGTCCAGGAAACAGAAACGAAGATGGTAGAGATGTCTGCTTTGAATCACCTGATGGCTACACACGTTTTGCAGCAAACACAGCAAATAGAACTTCTTTATGAACAGGCTGTCGAAGCTACGAGGAATGTCGAGCTTGGCAATAAAGAACTTACCCAAGCAATCCAACGGAACAGCAGCAGCAGAACCTTCCTTCTACTTTTTCTAGTTGTGCTTACATTTTCAATTCTCTTCCTTGATTGGTATAGTTAA 930 42.15 MTKFKDRTEDFKDAVRQCAISLEYSESKLAAIMASFIIQKPRQRSPFVKAALKTLESIGALEEFMLKHRKDYVDMYRTTDQERDNIEHEVTAFIKACQEQIDILKNSINEDEAHSKGWLGIKTDSASADAIAHKHGVVLILSERLHSVTSQFDKLRALRFQDIINKAIPRRKPGQVTKHRSADTPEYNNSEPRELDNFQHEPVRVQQQLLDDETRALQVELTTLLDAVQETETKMVEMSALNHLMATHVLQQTQQIELLYEQAVEATRNVELGNKELTQAIQRNSSSRTFLLLFLVVLTFSILFLDWYS 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3697908 3700958 + evm.model.ptg000021l.530 HCH13g0530 557035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0530 309 MobiDBLite consensus disorder prediction 171 199 - -
HCH13g0530 309 Gene3D - 212 306 - -
HCH13g0530 309 MobiDBLite consensus disorder prediction 176 199 - -
HCH13g0530 309 PANTHER SYNTAXIN-18 1 309 - GO:0005783(PANTHER)|GO:0006890(PANTHER)|GO:0031201(PANTHER)
HCH13g0530 309 Coils Coil 94 114 - -
HCH13g0530 309 FunFam Syntaxin-81 like 212 306 - -
HCH13g0530 309 SUPERFAMILY t-snare proteins 61 273 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
HCH13g0530 309 Pfam SNARE-complex protein Syntaxin-18 N-terminus 6 86 IPR019529 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0530 K08492 - csv:101207161 519.62