Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0539 ATGGATGAGGGAATGTCTAGATTTTACGTAAAATCGGGTGGCGGCGACGGTGGTAACGGGCCGAATAGCGGTTGTGGGTACACCGGAAAGGGAAGTGGGAGTAAATGTGGGAGATGGAATCCAACTGCAGAACAAGTTAAAGTGCTGACAGAACTGTTCAGGTCAGGACTTAGAACTCCGAGCAGTGAACAGATTCAGAAGATCTCTCATCAGTTAAGCTTTTACGGTAAGATCGAGAGCAAGAATGTCTTTTACTGGTTTCAGAACCATAAAGCTAGAGAGAGACAAAAACGTAGAAAAGTTTCTGTTGATCATGACACTGATCATTTCCTTCATCATTATGAATCAAGGATTCCAACTCCAAAGCATTTTGCAGAGACAAATAAAGGTATAATGGAGGCAGAACGAGTGACAAAAACTCTGCAACTTTTCCCATTAAACTCCATTGATGAAAGCGAATCAGATCAATTTAAAGTAAATGGGAATCATCAGTACGAGGAAACAAGAGCTTTCACCTACAAAATTGAGACAAATATGGATCACCCACCATTGGATCTTCGTTTAAGCTTCATTTAA 576 40.8 MDEGMSRFYVKSGGGDGGNGPNSGCGYTGKGSGSKCGRWNPTAEQVKVLTELFRSGLRTPSSEQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSVDHDTDHFLHHYESRIPTPKHFAETNKGIMEAERVTKTLQLFPLNSIDESESDQFKVNGNHQYEETRAFTYKIETNMDHPPLDLRLSFI 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3780071 3781132 - evm.model.ptg000021l.539 HCH13g0539 557044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0539 191 FunFam WUSCHEL-related homeobox 11 35 103 - -
HCH13g0539 191 SUPERFAMILY Homeodomain-like 37 100 IPR009057 -
HCH13g0539 191 ProSiteProfiles 'Homeobox' domain profile. 32 97 IPR001356 GO:0003677(InterPro)
HCH13g0539 191 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 30 120 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
HCH13g0539 191 SMART HOX_1 34 101 IPR001356 GO:0003677(InterPro)
HCH13g0539 191 Pfam Homeodomain 36 96 IPR001356 GO:0003677(InterPro)
HCH13g0539 191 Gene3D - 35 102 - -
HCH13g0539 191 CDD homeodomain 38 98 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0539 HCH-Chr13:3780071 HCH3g0207 HCH-Chr3:1315760 1.90E-22 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32801 PF00046 Homeodomain 7.80E-19 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0539 - - - 0.0