Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0539 ATGGATGAGGGAATGTCTAGATTTTACGTAAAATCGGGTGGCGGCGACGGTGGTAACGGGCCGAATAGCGGTTGTGGGTACACCGGAAAGGGAAGTGGGAGTAAATGTGGGAGATGGAATCCAACTGCAGAACAAGTTAAAGTGCTGACAGAACTGTTCAGGTCAGGACTTAGAACTCCGAGCAGTGAACAGATTCAGAAGATCTCTCATCAGTTAAGCTTTTACGGTAAGATCGAGAGCAAGAATGTCTTTTACTGGTTTCAGAACCATAAAGCTAGAGAGAGACAAAAACGTAGAAAAGTTTCTGTTGATCATGACACTGATCATTTCCTTCATCATTATGAATCAAGGATTCCAACTCCAAAGCATTTTGCAGAGACAAATAAAGGTATAATGGAGGCAGAACGAGTGACAAAAACTCTGCAACTTTTCCCATTAAACTCCATTGATGAAAGCGAATCAGATCAATTTAAAGTAAATGGGAATCATCAGTACGAGGAAACAAGAGCTTTCACCTACAAAATTGAGACAAATATGGATCACCCACCATTGGATCTTCGTTTAAGCTTCATTTAA 576 40.8 MDEGMSRFYVKSGGGDGGNGPNSGCGYTGKGSGSKCGRWNPTAEQVKVLTELFRSGLRTPSSEQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSVDHDTDHFLHHYESRIPTPKHFAETNKGIMEAERVTKTLQLFPLNSIDESESDQFKVNGNHQYEETRAFTYKIETNMDHPPLDLRLSFI 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3780071 3781132 - evm.model.ptg000021l.539 HCH13g0539 557044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0539 191 FunFam WUSCHEL-related homeobox 11 35 103 - -
HCH13g0539 191 SUPERFAMILY Homeodomain-like 37 100 IPR009057 -
HCH13g0539 191 ProSiteProfiles 'Homeobox' domain profile. 32 97 IPR001356 GO:0003677(InterPro)
HCH13g0539 191 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 30 120 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
HCH13g0539 191 SMART HOX_1 34 101 IPR001356 GO:0003677(InterPro)
HCH13g0539 191 Pfam Homeodomain 36 96 IPR001356 GO:0003677(InterPro)
HCH13g0539 191 Gene3D - 35 102 - -
HCH13g0539 191 CDD homeodomain 38 98 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0539 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0539 HCH-Chr13:3780071 HCH3g0207 HCH-Chr3:1315760 1.90E-22 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0661 . 19 256 Wox Gene Family AT3G03660 55.5 8.7e-51 197.6
HCH12g0054 . 28 173 Wox Gene Family AT1G20700 50.7 1.7e-37 152.9
HCH4g0626 . 5 153 Wox Gene Family AT1G46480 68.4 2.5e-51 198.7
HCH13g0539 . 31 191 Wox Gene Family AT3G11260 51.7 6.2e-39 157.5
HCH4g0626 . 5 153 Wox Gene Family AT1G46480 68.4 2.5e-51 198.7
HCH13g0539 . 31 191 Wox Gene Family AT3G11260 51.7 6.2e-39 157.5
HCH11g0661 . 19 256 Wox Gene Family AT3G03660 55.5 8.7e-51 197.6
HCH12g0054 . 28 173 Wox Gene Family AT1G20700 50.7 1.7e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008920 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32801 PF00046 Homeodomain 7.80E-19 CL0123 HCH TF