Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0540 ATGGCAACGACTGAGAATACGGTTCTGCAATTCTCACAATCTTCGACAACCTTATCCGCTAAAGTTCATCCTTTAGTTATCTTCAACATCTGTGATTGCTACGTCAGACGCCCTGACCAAGCCGACCGCGTCATCGGCACTCTCCTCGGCTCCGTTTTACCTGATGGAACCGTCGATATTCGTAACTCTTACGCTGTTCCTCATAATGAATACTCCGATCAGGTTGCTCTGGATATTGATTATCATCACAATATGTTGATTTCTCATCAGAAAGTTAATCCAAAGGAAGTTATTGTTGGATGGTATTCAACTGGTACGGGAGTTACGGGTGGCAGTGCATTGATACATGAATTTTATTCTAGAGAAGTTACAAACCCTATTCATTTGACTGTTGACACTGGATTTAAAAATGGAGATGGAACTATAAAAGCGTATGTTTCTGTCAATTTGTCTTTGGGAGATAGGCAGCTTGCTGCTCAATTTCAAGAAATTCCTTTAGATCTTCGAATGATTGAAGCTGAAAGACTTGGATTTGATATATTGAAGACAACTGCTGTTGATAAACTCCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTACTTGCTTTAATTGACGATATCTACAAATATGTTGACAATGTTGTGGAAGGGCATGTTGAGCCAGACAACGCAATAGGGAGATTTCTAGCAGATACTGTTGCTTCTCTCCCAAAACTGTCACCATCAGCCTTTGATAAGCTGATGAATGATAATGTGCAGGATCATTTGCTGTTGCTTTATTTATCAAGTATCACCAGGACACAGCTTAGTTTGGCCGAAAAGTTGAATACGGCGGCGCAGATTCTGTAA 858 40.44 MATTENTVLQFSQSSTTLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEYSDQVALDIDYHHNMLISHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVTNPIHLTVDTGFKNGDGTIKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERLGFDILKTTAVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEPDNAIGRFLADTVASLPKLSPSAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3788223 3790373 - evm.model.ptg000021l.540 HCH13g0540 557045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0540 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
HCH13g0540 285 SMART pad1_6 19 150 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
HCH13g0540 285 FunFam Eukaryotic translation initiation factor 3 subunit F 8 186 - -
HCH13g0540 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
HCH13g0540 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 123 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
HCH13g0540 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 14 281 - GO:0003743(PANTHER)|GO:0006413(PANTHER)|GO:0031369(PANTHER)|GO:0071541(PANTHER)
HCH13g0540 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
HCH13g0540 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
HCH13g0540 285 Pfam Maintenance of mitochondrial structure and function 172 279 IPR024969 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0108 HCH-Chr11:1303217 HCH13g0540 HCH-Chr13:3788223 2.70E-26 wgd
HCH13g0540 HCH-Chr13:3788223 HCH9g0759 HCH-Chr9:5118808 1.40E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0540 K03249 - csv:101205957 542.732