Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0552 ATGACAAATTATTATGATATTGATGACATTTTAGCAGAGGAAGAGCTTGTTTCAGTTGTTTTCCAAAAGGCAGTAAATGGGGTCGGAATTGATCCAAGTTCTGAAACAGATTCTGTTGAACCTGGATCAAAAGTAGAATTACCTTTCTGGCTTGCTCATGAATTACATCTCAGACAAGTGGTGGCTATGGCTTTACCTGCCTGTTTCAACCAAAAAACGCGATTGGAAATCCAGGCTGATGCTGCATTTGTTGATCTACGGTCTCGTTGTCAATACTTCTATGAGTTTGGATGCAAGATTGCTCCTCTGGTTGGTGATAGAACAATTGGTTCTTGGCTTTTATCCACATTCAAGAGTAGGTACAAGGAAGTCCTCACCAAGGCACACACTGCAGCATATTCTGCTAGTTCTAAATACTTGACACTTTTGTCCAAAGAAGAAACAGAAATGTATGAGGCAGCTCAGTCCTCAATGACAGCGTTTAAGAAATGGCGAATGGGCGGACCTAGATTTCAGAAAGCATCCTTTCTTGGGAGGAAAAGGAAGTCATCTGAGTAG 558 41.22 MTNYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVEPGSKVELPFWLAHELHLRQVVAMALPACFNQKTRLEIQADAAFVDLRSRCQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAAYSASSKYLTLLSKEETEMYEAAQSSMTAFKKWRMGGPRFQKASFLGRKRKSSE 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3894560 3896805 + evm.model.ptg000021l.552 HCH13g0552 557057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0552 185 PANTHER UNCHARACTERIZED 1 183 IPR010492 GO:0000811(PANTHER)|GO:1902975(PANTHER)
HCH13g0552 185 SUPERFAMILY GINS helical bundle-like 65 166 IPR036224 -
HCH13g0552 185 Pfam GINS complex protein helical bundle domain 65 165 IPR021151 -
HCH13g0552 185 CDD GINS_A_psf3 65 167 - -
HCH13g0552 185 SUPERFAMILY PriA/YqbF domain 1 66 - -
HCH13g0552 185 CDD GINS_B_Psf3 4 66 - -
HCH13g0552 185 Gene3D - 2 166 IPR038437 -
HCH13g0552 185 Pfam GINS/PriA/YqbF domain 5 55 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0552 K10734 - csv:101203869 339.732