Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0561 ATGAGAGGCTACCATGAAACTCGCTCTTCTTCTTCTTGTGCAGCTTGCAAATTGCTCAAGAGAAGATGCACACCCACATGTATATTTGCTCCTTATTTCCGCTCTGATGAGCCGAAGAAATTTGCCAAAGTTCACAAAGTGTTTGGAGCAAGCAACGTGAGCAAGATCCTGACTGAAGTGCCGGAAGAGCAGCGAGAGGACACGGTGAATTCGCTTGCTTACGAGGCAGAGGCACGGCTGCTAGACCCCGTCTACGGCTGCATCGGCGCCATCGCTTTGTTGCAGAGAAAAATGGTGGAACTTCAACATGATCTGGCTATTGCTAGAGCTCGTCTTGCTGGTTATGCTAATACCAATTCTTCTTCTTCTTCTTCTTTATCTAGTGCTGTGGATGATAGTTTTAGCATGTCTTTTTCTTTTGCTGAATTTCCTAATTCTTACAGTGGCTTGAATATCAGCCAGAATTCATCAGAATTGAGCCAATATGGATATATATATGACTTCAGTCATTTCCCTTATATTCCATTTAAAGCATGA 537 43.39 MRGYHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLLDPVYGCIGAIALLQRKMVELQHDLAIARARLAGYANTNSSSSSSLSSAVDDSFSMSFSFAEFPNSYSGLNISQNSSELSQYGYIYDFSHFPYIPFKA 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3994719 3995255 - evm.model.ptg000021l.561 HCH13g0561 557066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0561 178 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
HCH13g0561 178 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
HCH13g0561 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 123 - -
HCH13g0561 178 Coils Coil 91 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0561 HCH-Chr13:3994719 HCH9g0123 HCH-Chr9:676969 5.60E-37 dispersed
HCH1g0339 HCH-Chr1:49997334 HCH13g0561 HCH-Chr13:3994719 3.80E-33 wgd
HCH13g0561 HCH-Chr13:3994719 HCH3g1473 HCH-Chr3:52775859 3.50E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32805 PF03195 LOB 1.90E-38 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0561 - - - 0.0