Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g0561 | ATGAGAGGCTACCATGAAACTCGCTCTTCTTCTTCTTGTGCAGCTTGCAAATTGCTCAAGAGAAGATGCACACCCACATGTATATTTGCTCCTTATTTCCGCTCTGATGAGCCGAAGAAATTTGCCAAAGTTCACAAAGTGTTTGGAGCAAGCAACGTGAGCAAGATCCTGACTGAAGTGCCGGAAGAGCAGCGAGAGGACACGGTGAATTCGCTTGCTTACGAGGCAGAGGCACGGCTGCTAGACCCCGTCTACGGCTGCATCGGCGCCATCGCTTTGTTGCAGAGAAAAATGGTGGAACTTCAACATGATCTGGCTATTGCTAGAGCTCGTCTTGCTGGTTATGCTAATACCAATTCTTCTTCTTCTTCTTCTTTATCTAGTGCTGTGGATGATAGTTTTAGCATGTCTTTTTCTTTTGCTGAATTTCCTAATTCTTACAGTGGCTTGAATATCAGCCAGAATTCATCAGAATTGAGCCAATATGGATATATATATGACTTCAGTCATTTCCCTTATATTCCATTTAAAGCATGA | 537 | 43.39 | MRGYHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLLDPVYGCIGAIALLQRKMVELQHDLAIARARLAGYANTNSSSSSSLSSAVDDSFSMSFSFAEFPNSYSGLNISQNSSELSQYGYIYDFSHFPYIPFKA | 178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 3994719 | 3995255 | - | evm.model.ptg000021l.561 | HCH13g0561 | 557066 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g0561 | 178 | Pfam | Lateral organ boundaries (LOB) domain | 12 | 109 | IPR004883 | - | |
HCH13g0561 | 178 | ProSiteProfiles | LOB domain profile. | 11 | 112 | IPR004883 | - | |
HCH13g0561 | 178 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 11 | 123 | - | - | |
HCH13g0561 | 178 | Coils | Coil | 91 | 111 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0561 | HCH-Chr13:3994719 | HCH9g0123 | HCH-Chr9:676969 | 5.60E-37 | dispersed | |
HCH1g0339 | HCH-Chr1:49997334 | HCH13g0561 | HCH-Chr13:3994719 | 3.80E-33 | wgd | |
HCH13g0561 | HCH-Chr13:3994719 | HCH3g1473 | HCH-Chr3:52775859 | 3.50E-31 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32805 | PF03195 | LOB | 1.90E-38 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g0561 | - | - | - | 0.0 |