Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0567 ATGACATCGGAGATTTTTGAGAGGAAGAGGAAGTCACGGAGTAGGCGGGATCGATCGACCGTGGCTGAGACTCTAGCTAAGTGGAAAGCTTATAATGAATGTAAAGATGGGAATGAGGATGGGGCTAAGTTGATTCGGAAAGCTCCAGCTAAAGGATCTAAGAAAGGATGTATGAAAGGGAAGGGAGGTCCTTTGAATTCAAATTGTAATTACAGAGGTGTGAGGCAGAGGACTTGGGGTAAATGGGTTGCTGAAATTCGTGAACCGAATCGAGGGAGTAGGCTTTGGCTCGGTACCTTTCCGACTGCGGTTGAAGCCGCGCTTGCATACGATGAGGCTGCTCGGATAATGTACGGTCCGTCTGCCCGTTTAAACCTTCCGAATGTAACAAATAAGGAGCAGTTTAAAGGGATTCATGTGGAGGATTTTTCGGTAGTTTGTCAGTCGGATTCGGAGTCGACGACGACATCAAATCACTCTGAGGTTTGTGTGCCTGAGGAGTTGATCAGGAAGCATCATCAGCAGCAGCACCAGCACCAGCAGCAGTTTGTGTCCTCATGTATGAAGAATGAGGATGGAGGAGACAATTTAATGGTTCCTTTAGTTTCCACACCAATTAGCATGATGAAGCAAGTGAAAGATGAGTCTGTTGATGCTAGAGATCATGATATGAGTGATAAAGAATTCGTGATGTCGGACACCGGGTATTCGATTTTGGATGACTTGCAGAATGTGGATGAAATGTTTGATGTGGAGGAGCTTTTAGGACTATTAGAAAACACTCCCAATTTTGATCCAAACTGTGTGGAGGCTTATGGGAATTATGCTGATCATACAATGCCTTGCCAATCCCAAGTTACCAATTTTGGTTCTGAGAAACCTTCACATTTGTATTACCAATTTGAAAATCCTGATGCCAAGCTGCTTGGAAGCATACAACACATGGATCAAGCTCCTCCATTCACTTCTGATGTCGACTACGGGTTCGATTTCCTGAGGCAGGGAAGGGAGGAGGATTATAACTGCGCAAACGATTGTGAAAGATTCTTGAATTTTGAGATGGGTGATTTAGGTTTTTGA 1080 44.35 MTSEIFERKRKSRSRRDRSTVAETLAKWKAYNECKDGNEDGAKLIRKAPAKGSKKGCMKGKGGPLNSNCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAVEAALAYDEAARIMYGPSARLNLPNVTNKEQFKGIHVEDFSVVCQSDSESTTTSNHSEVCVPEELIRKHHQQQHQHQQQFVSSCMKNEDGGDNLMVPLVSTPISMMKQVKDESVDARDHDMSDKEFVMSDTGYSILDDLQNVDEMFDVEELLGLLENTPNFDPNCVEAYGNYADHTMPCQSQVTNFGSEKPSHLYYQFENPDAKLLGSIQHMDQAPPFTSDVDYGFDFLRQGREEDYNCANDCERFLNFEMGDLGF 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4342566 4344040 - evm.model.ptg000021l.567 HCH13g0567 557072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0567 359 Gene3D AP2/ERF domain 70 128 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0567 359 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 278 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
HCH13g0567 359 CDD AP2 69 129 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0567 359 FunFam Ethylene-responsive transcription factor 2 69 128 - -
HCH13g0567 359 Pfam AP2 domain 70 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0567 359 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0567 359 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0567 359 SMART rav1_2 70 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g0567 359 SUPERFAMILY DNA-binding domain 70 127 IPR016177 GO:0003677(InterPro)
HCH13g0567 359 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0161 HCH-Chr12:859769 HCH13g0567 HCH-Chr13:4342566 2.00E-31 dispersed
HCH13g0567 HCH-Chr13:4342566 HCH4g0761 HCH-Chr4:4894477 6.40E-32 dispersed
HCH13g0560 HCH-Chr13:3974090 HCH13g0567 HCH-Chr13:4342566 2.00E-18 proximal
HCH2g0763 HCH-Chr2:51265489 HCH13g0567 HCH-Chr13:4342566 2.00E-47 transposed
HCH13g0567 HCH-Chr13:4342566 HCH9g0802 HCH-Chr9:5546165 2.40E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32806 PF00847 AP2 9.10E-14 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0567 - - - 0.0