Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0582 ATGGCTGCTTCTGGTTTTGTGAGAGTTTTGACTTTGGCTTTGCTTTTGCTCTTCTTGGGCAATGCCAGTGCTCAACTTTCTACTAGCTTTTACTCTTCATCTTGTCCAAAACTCTTATCCACTGTTAAATCCACAGTGCAGTCTGCTATTTCAAAGGAAGCTCGCATGGGGGCTTCCATTCTACGTTTGTTCTTCCATGACTGCTTTGTCAATGGATGTGATGGGTCAATTTTACTAGACGACACATCCAACTTCACAGGGGAGAAAAATGCGAATCCGAATCGAAATTCTGCGAGAGGTTTCGATGTCATCGATAATATTAAAACCGCCGTCGAGAATGTTTGCCCTGGAGTTGTTTCTTGTGCTGATGTTTTGACCATTGCAGCTCGTGACTCTGTTGTTATTCTAGGAGGGACAAGCTGGAATGTAAAGTTGGGAAGAAGAGATGCAAGAACTGCAAGCCAATCCCAAGCCAACAGTGATATACCAGCTCCATCTTCAAGCTTAAGCCAACTAATCTCTAGATTTAGTGCTCTTGGACTCTCCAACACTGACTTGGTTGCTCTCTCTGGTGGGCATACAATTGGACAAGCAAGATGCACAACATTCAGAGCTCGGATCTACAATGAGACAAACATTGACAGTTCTTTTGCGACAACAAGACAAGCAAATTGTCCAAGCACTTCTGGCTCAGGAGACAACAATTTGGCACCTCTTGATGTCCAAACTTCCACTGCTTTTGACACCAACTATTTCAAAAACCTTATCCAGAATAGGGGTCTCCTCCATTCTGATCAAGTATTGTTTAATGGTGGCTCCACAGACTCACTTGTAAGGACTTATAGCAATAACCCCTCCACTTTCAACTCTGACTTTGCTTCTGCTATGATCAAGATGGGAGATATCAGCCCTCTTACTGGATCCAATGGTGAAATCAGAAAGAATTGTAGGATTGTCAATTAA 963 42.89 MAASGFVRVLTLALLLLFLGNASAQLSTSFYSSSCPKLLSTVKSTVQSAISKEARMGASILRLFFHDCFVNGCDGSILLDDTSNFTGEKNANPNRNSARGFDVIDNIKTAVENVCPGVVSCADVLTIAARDSVVILGGTSWNVKLGRRDARTASQSQANSDIPAPSSSLSQLISRFSALGLSNTDLVALSGGHTIGQARCTTFRARIYNETNIDSSFATTRQANCPSTSGSGDNNLAPLDVQTSTAFDTNYFKNLIQNRGLLHSDQVLFNGGSTDSLVRTYSNNPSTFNSDFASAMIKMGDISPLTGSNGEIRKNCRIVN 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4450166 4451926 + evm.model.ptg000021l.582 HCH13g0582 557087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0582 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
HCH13g0582 320 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
HCH13g0582 320 Gene3D Peroxidase, domain 2 163 299 - -
HCH13g0582 320 FunFam Peroxidase 29 170 - -
HCH13g0582 320 Gene3D - 30 317 - -
HCH13g0582 320 ProSiteProfiles Plant heme peroxidase family profile. 25 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 FunFam Peroxidase 163 299 - -
HCH13g0582 320 CDD secretory_peroxidase 25 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH13g0582 320 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 PANTHER PEROXIDASE 72-RELATED 15 319 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 Pfam Peroxidase 42 284 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0582 320 SUPERFAMILY Heme-dependent peroxidases 25 320 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0582 HCH-Chr13:4450166 HCH2g0985 HCH-Chr2:53144907 8.10E-111 dispersed
HCH13g0582 HCH-Chr13:4450166 HCH13g0583 HCH-Chr13:4460824 7.00E-131 tandem
HCH13g0582 HCH-Chr13:4450166 HCH3g1495 HCH-Chr3:52974922 3.20E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0582 K00430 - mtr:11440462 507.679