Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0583 ATGGCCTCTGGTTCTGGGTTCAGAGAGTTTTTGATTTTGAGTTTCTTTGTGCTTTTTCTAAGGAATGCCAGTGCTCAACTTTCTGCTGATTTTTACTCAAGATCTTGTCCGAATCTCTTATCTGTTGTGAGATCCAAAGTTCAATCTGCAATATCACAGGAAGCTCGCATGGGGGCTGCCATTCTTCGCTTGTTCTTCCTTGATTGTTTTGTCAATGGATGTGATGGGTCGATTTTACTCGACGACACACCAGAATTCATTGGAGAGAAAAATGCAGATTCCAACCGGAATTCTGCAAGAGGTTTCGATGTGATTGATGATATTAAAACAGCCGTCGAGAATACTTGCCCAGACCTTGTCTCTTGTGCTGATATTTTGGCCATTGCATCTCGTGATTCTGTTGTTAGTTTAGGAGGACCAAACTGGAGTGTAAAGTTGGGTAGAAGAGACACCAGAACTGCAACCCAATCCCAAGCCAACAATGACATCCCATCTCCATCTTCAAACCTAGACCAACTCATTTCTAGATTTAATTCTCTTGGACTCTCCACCACAGACTTGGTTGCTCTCTCTGGCGCGCACACAATTGGACAAGCAAGATGCACAAATTTCAGAGATCGTATCTACAACGACACCAATATAGACAGTTTTTTCGCCGCAACAATGAAGGAAAACTGTCCAAGCATTTCAGGCCCAGAAGATGAAAATTTGGCTCCTCTTGATATACAAACTCCCTCTTCTTTTGACAACAGCTATTTCAGAAACCTTGTCGAGAATAAGGGCCTCCTCCATTCTGATCAAGAATTGTTCAATGGTGGTTCCACAGATTTACTGGTTAGTACTTACAGCAATAGCCACGCCATTTTCAATTCTGCTTTTGTTTCTGCTATGATCAAGATGGGAGATATCAGCCCTCTTACTGGATCCAATGGTGAAATCAGGAAGAATTGTACGATTGTCAATTAA 966 42.03 MASGSGFREFLILSFFVLFLRNASAQLSADFYSRSCPNLLSVVRSKVQSAISQEARMGAAILRLFFLDCFVNGCDGSILLDDTPEFIGEKNADSNRNSARGFDVIDDIKTAVENTCPDLVSCADILAIASRDSVVSLGGPNWSVKLGRRDTRTATQSQANNDIPSPSSNLDQLISRFNSLGLSTTDLVALSGAHTIGQARCTNFRDRIYNDTNIDSFFAATMKENCPSISGPEDENLAPLDIQTPSSFDNSYFRNLVENKGLLHSDQELFNGGSTDLLVSTYSNSHAIFNSAFVSAMIKMGDISPLTGSNGEIRKNCTIVN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4460824 4463366 + evm.model.ptg000021l.583 HCH13g0583 557088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0583 321 CDD secretory_peroxidase 26 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH13g0583 321 PANTHER PEROXIDASE 72-RELATED 15 319 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 Gene3D Peroxidase, domain 2 164 300 - -
HCH13g0583 321 SUPERFAMILY Heme-dependent peroxidases 26 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 FunFam Peroxidase 30 175 - -
HCH13g0583 321 Pfam Peroxidase 43 284 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
HCH13g0583 321 ProSiteProfiles Plant heme peroxidase family profile. 26 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0583 321 Gene3D - 30 317 - -
HCH13g0583 321 FunFam Peroxidase 164 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0583 HCH-Chr13:4460824 HCH2g0985 HCH-Chr2:53144907 1.50E-104 dispersed
HCH13g0582 HCH-Chr13:4450166 HCH13g0583 HCH-Chr13:4460824 7.00E-131 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0583 K00430 - vvi:100257059 456.447