Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0584 ATGTCAAGAGAAAGGGAAGAACATGATCTTGATGAGATAGGGAAGAAGATAAAAAGGGAAATAGACCCCTTTTCTGAATCTGTTGATCCAATGGGAAGAAGGCATATTCTGAATTGTCCTGGCACAACCTTAAATACCATTACACCATGTGCAGCATGTAAGCTTCTTAGAAGAAGGTGTGCTCAAGAATGTCCATTTTCTCCCTACTTCTCTCCACATGAACCCCACAAGTTTGCTTCTGTCCACAAAGTTTTTGGTGCCAGCAACGTTGCCAAGATGCTAATGGAAGTACCAGAGAATCATAGAGCCGACGCCGCAAACAGCCTTGTTTATGAAGCAAACCTGAGGCTGAGAGACCCTGTCTACGGCTGCATGGGCGCCATTTCCACTTTACAGCACCAAGTTCAAACTTTACAAGCTGAGCTTCATGCTATAAGAACTGAGATATTGAAATACAAGTATAGGGAAGCTCTCATACCTTCTTCTTCTCCATCATCTTCTTCTTCCCACGTCGCTTTGCTCGCTGCCACCGGAGTTCTTTCAATCACCGCGACACCACCGGCAGCACCAACAACTCCGCCCCATTCACAGCCGCCGCCACTCTCTCTACCACCTCCTCCTCCCTCGTCCTCTTCCATCTTTTCCCCACCAATAAGTGCTTCCCATTCAGAATTTAATACCATCTCAAGTGAACATATTTCCTACTTTGGTTGA 714 45.94 MSREREEHDLDEIGKKIKREIDPFSESVDPMGRRHILNCPGTTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPENHRADAANSLVYEANLRLRDPVYGCMGAISTLQHQVQTLQAELHAIRTEILKYKYREALIPSSSPSSSSSHVALLAATGVLSITATPPAAPTTPPHSQPPPLSLPPPPPSSSSIFSPPISASHSEFNTISSEHISYFG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4470567 4471991 - evm.model.ptg000021l.584 HCH13g0584 557089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0584 237 MobiDBLite consensus disorder prediction 184 218 - -
HCH13g0584 237 MobiDBLite consensus disorder prediction 187 213 - -
HCH13g0584 237 Coils Coil 128 148 - -
HCH13g0584 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 47 170 - -
HCH13g0584 237 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
HCH13g0584 237 Pfam Lateral organ boundaries (LOB) domain 49 145 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0584 HCH-Chr13:4470567 HCH1g0301 HCH-Chr1:46982579 1.60E-55 dispersed
HCH1g0310 HCH-Chr1:48342677 HCH13g0584 HCH-Chr13:4470567 2.90E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32808 PF03195 LOB 1.60E-40 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0584 - - - 0.0