Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0589 ATGGACTACGAATGTGGCCGATTTTGGAATCCTTCAAAGAAGGATTCTTGGAAGACAACTTTGATATTGGCCTACCAGAGCCTTGGTGTGGTATATGGAGACCTTGGCATTTCCCCACTGTATGTTTATAGAAGCACATTTGCTGATGACATTCGGCATTCGGATACAAACGAGGAAATTTTTGGAGTTCTTTCTTTCGTCTTCTGGACTCTGACTCTCATCCCACTTTTCAAGTATGTTTTTATCGTTCTCCGAGCCGACGACAATGGAGAGGGTGGTACATTTGCTTTGTATTCCTTGCTATGTAGGCATTCAAATGTAAGCCTTCTGCCTAATAGACAAGTTGCTGATGAAGAACTTTCCACATATAAATTGGAGCATCCTCCTGATAGCAAGAGTAATTCAAAGATGAAGATGTTACTTGAGAAGCACAAAACCTTGCACACTGCATTGCTGATTCTGGTTCTTGTGGGAACTTGCATGGTAATTGGGGATGGAGTTCTCACTCCAGCCATTTCTGTTTTTTCTGCTGTATCTGGCCTTGAGTTGTCTCTATCGAAAGGTCATCACCAATATGCCGTAGTTCCAATTACGTGTGCTATCTTGTTATGTCTGTTTGCACTTCAACACTATGGAACACATAAGGTGGGATTCATTTTTGCACCAGTTGTGCTCACCTGGCTAATATGCATCAGTGGCCTTGGTATCTACAATATTTTCAAGTGGAACCCGCATGTGTATCGAGCTATTTCTCCTTACTATATGTTCAGATTCTTGGAGAAGACAAAGTTAGGTGGATGGATGTCTTTGGGTGGTGTCTTATTGTGCATAACAGGTTCAGAAGCAATGTTTGCTGATCTTGGTCACTTCTCCTATGCTGCAATTCAGATTGCTTTTACCTTCATGGTTTACCCAGCCCTTATATTGGCATACATGGGTCAAGCCGCTTACTTGTCACAACATCACCACCCTGATGACCGGATAAGTTTTTATGCCTCTGTACCGGACCGTATGAAGTGGCCGATTATCGTTATCGCCATCCTTGCTTCCGTGGTGGGTAGCCAAGCAATCATCACTGGAACATTTTCAATCATCAATCAGAGTCAATCACTGGGGTGCTTCCCAAGGGTCAAGGTTATTCACACATCTGACAATATACATGGCCAAATCTACATTCCTGAGATTAATTGGATGCTAATGATCCTCTGCATTGCTGTGACCATTGGATTTAGAGACATAAAGCATCTGGGTAATGCATCAGGTCTAGCTGTGATGACTGTGATGCTTGTGACTACATGTCTGACTTCCTTGGTAATAGTTCTCTGTTGGCATAAACCCCCTATTCTAGCTTTGATATTTCTTGTTTTCTTTGGGTCCATTGAATTATTATACTTCTCAGCGTCAATCACCAAATTCAGAGAGGGAGCCTGGCTTCCCATTCTGTTAGCTCTCTTTCTCATGGCAATCATGTTTGTTTGGCACTATGCAATAATCAAGAAATATGAATTTGACCTCCACAATAAAGTTTCATTAGAATGGTTATTAGCCTTGGGTCCAAGCTTGGGAATTGCTCGAGTCCCCGGCATCGGGATAGTATTCACCGAGCTCACCTCTGGCATCCCAGCTAACTTCTCTCGCTTTGTAACCAACCTCCCTGCCTTCCATCGTGTCCTTGTCTTTGTCTGTATAAAATCTGTACCTGTTCCTCACGTGCCATCTTCTGAGCAATACCTTGTTGGCCGCGTTGGTCCTGCTGCTCATCGATCATATCGATGTATAGTTCGGTATGGATACCGTGATGTTCACCAGGATGTCGATTCCTTCGAATCGGATTTAGTCGATCGGCTCACTGATTTCATCCGTAATGATTGGTACGAAAGGCGTGGGACTAACTCGGGCAGTGATCATGATGATGATGCATCGAAAACATACGAGTCTCAAAGCAAATCTAACTTGACCATTAAACGGAATGTGGCATTTTCTGCCACACCTACTTGTGAGATGGAGGAGAGTGCAGACCCAGCAGATGCTGATTACTCCATTGAACCAATTCATGCAGACACTATAGTAGCAGAAACAATCAACATTGTCGAAAGAAGGGTGAGGTTCGAGGTAGACGACAAGTCTGAAACGGACACTCCTAATGAGGCAGACGTTCGACTGAGAGAAGAACTAGAAGATTTAGTAGCAGCACAGGAAGCTGGAACTGCTTTCATTCTGGGGCATTCTTATGTAAAGTCAAAACAAGGATCATCCATCTTCAAGAGACTGGCTATTAATTATGGCTTCAACTTCTTGAGGAGGAATTGCAGAGGTCCAGATGTCACCCTTAAGGTTCCTCCTGCATCTCTTCTTGAAGTTGGAATGGTTTATGTTGTGTAA 2382 43.32 MDYECGRFWNPSKKDSWKTTLILAYQSLGVVYGDLGISPLYVYRSTFADDIRHSDTNEEIFGVLSFVFWTLTLIPLFKYVFIVLRADDNGEGGTFALYSLLCRHSNVSLLPNRQVADEELSTYKLEHPPDSKSNSKMKMLLEKHKTLHTALLILVLVGTCMVIGDGVLTPAISVFSAVSGLELSLSKGHHQYAVVPITCAILLCLFALQHYGTHKVGFIFAPVVLTWLICISGLGIYNIFKWNPHVYRAISPYYMFRFLEKTKLGGWMSLGGVLLCITGSEAMFADLGHFSYAAIQIAFTFMVYPALILAYMGQAAYLSQHHHPDDRISFYASVPDRMKWPIIVIAILASVVGSQAIITGTFSIINQSQSLGCFPRVKVIHTSDNIHGQIYIPEINWMLMILCIAVTIGFRDIKHLGNASGLAVMTVMLVTTCLTSLVIVLCWHKPPILALIFLVFFGSIELLYFSASITKFREGAWLPILLALFLMAIMFVWHYAIIKKYEFDLHNKVSLEWLLALGPSLGIARVPGIGIVFTELTSGIPANFSRFVTNLPAFHRVLVFVCIKSVPVPHVPSSEQYLVGRVGPAAHRSYRCIVRYGYRDVHQDVDSFESDLVDRLTDFIRNDWYERRGTNSGSDHDDDASKTYESQSKSNLTIKRNVAFSATPTCEMEESADPADADYSIEPIHADTIVAETINIVERRVRFEVDDKSETDTPNEADVRLREELEDLVAAQEAGTAFILGHSYVKSKQGSSIFKRLAINYGFNFLRRNCRGPDVTLKVPPASLLEVGMVYVV 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4513494 4518254 - evm.model.ptg000021l.589 HCH13g0589 557094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0589 793 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 14 792 IPR003855 GO:0005886(PANTHER)|GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
HCH13g0589 793 MobiDBLite consensus disorder prediction 627 648 - -
HCH13g0589 793 Pfam K+ potassium transporter integral membrane domain 23 515 IPR053951 -
HCH13g0589 793 Pfam K+ potassium transporter C-terminal domain 527 791 IPR053952 -
HCH13g0589 793 MobiDBLite consensus disorder prediction 627 644 - -
HCH13g0589 793 NCBIfam potassium uptake protein 23 792 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0589 HCH-Chr13:4513494 HCH9g0158 HCH-Chr9:943132 6.50E-287 dispersed
HCH1g0295 HCH-Chr1:45994348 HCH13g0589 HCH-Chr13:4513494 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0589 K03549 - vvi:100232992 1295.41