Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0595 ATGGCCATCTCTACTCTCCCAATTCTCCTCCCTCTCCTCCTCCTCCTCCTCTGCCTCCGCGGTCTCTACGCCGACTCCGGTCACGCCACATTCTACGGTGGTGGAGACGCTTCCGGCACAATGGGTGGAGCTTGTGGATATGGAAATTTATACAGCCAAGGGTACGGAACAAACACAGCCGCATTAAGCACTGCTCTTTTCAACAATGGCTTGAGCTGTGGCTCTTGCTATGAAATCACTTGCAGCGGTGACCCCAAATGGTGCCTCCCCGGAACCATCACCGTCACCGCCACCAACTTCTGCCCGCCGAATTTCGCACTCGCCAACGACAATGGAGGCTGGTGCAACCCCCCACTTCAACACTTTGACTTGGCTGAGCCCGCTTTCCTTCAAATCGCTCAGTACCGCGCCGGCATCGTTCCCGTCTCCTTCAAACGAGTGCCTTGTGTAAAGAAAGGAGGAATAAGGTTCACAATCAACGGCCATTCTTACTTCAATTTGGTTCTGATCACGAACGTGGCCGGCGCCGGAGATATTCATTCGGTATCGATTAAAGGGTCAAAAACAGGGTGGCAAGCGATGTCAAGGAACTGGGGACAGAATTGGCAGAGCAACAATGACCTTGATGGACAGAGTTTGTCTTTTCAAGTGACGACGAGCGACGGTCGGACGGTGACAAGCTACGACGCCGTACCGGCGAACTGGCATTTCGGTCAGACTTTTGCCGGAGGGCAATTCTAA 741 53.58 MAISTLPILLPLLLLLLCLRGLYADSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEITCSGDPKWCLPGTITVTATNFCPPNFALANDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFKRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDIHSVSIKGSKTGWQAMSRNWGQNWQSNNDLDGQSLSFQVTTSDGRTVTSYDAVPANWHFGQTFAGGQF 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4547515 4548610 - evm.model.ptg000021l.595 HCH13g0595 557100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0595 246 CDD DPBB_EXPA_N 26 149 - -
HCH13g0595 246 FunFam Expansin 19 150 - -
HCH13g0595 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 243 IPR007117 -
HCH13g0595 246 SUPERFAMILY Barwin-like endoglucanases 12 172 IPR036908 -
HCH13g0595 246 SUPERFAMILY PHL pollen allergen 151 242 IPR036749 -
HCH13g0595 246 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576(InterPro)
HCH13g0595 246 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576(InterPro)
HCH13g0595 246 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576(InterPro)
HCH13g0595 246 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576(InterPro)
HCH13g0595 246 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576(InterPro)
HCH13g0595 246 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576(InterPro)
HCH13g0595 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 154 IPR007112 -
HCH13g0595 246 FunFam Expansin 154 246 - -
HCH13g0595 246 Gene3D - 22 149 IPR036908 -
HCH13g0595 246 PRINTS Expansin signature 153 165 IPR002963 GO:0009664(InterPro)
HCH13g0595 246 PRINTS Expansin signature 229 245 IPR002963 GO:0009664(InterPro)
HCH13g0595 246 PRINTS Expansin signature 165 186 IPR002963 GO:0009664(InterPro)
HCH13g0595 246 PRINTS Expansin signature 54 68 IPR002963 GO:0009664(InterPro)
HCH13g0595 246 PRINTS Expansin signature 112 129 IPR002963 GO:0009664(InterPro)
HCH13g0595 246 PRINTS Expansin signature 200 221 IPR002963 GO:0009664(InterPro)
HCH13g0595 246 PRINTS Expansin signature 129 142 IPR002963 GO:0009664(InterPro)
HCH13g0595 246 PRINTS Expansin signature 81 92 IPR002963 GO:0009664(InterPro)
HCH13g0595 246 PRINTS Expansin signature 93 103 IPR002963 GO:0009664(InterPro)
HCH13g0595 246 SMART dpbb_1 59 144 IPR007112 -
HCH13g0595 246 Pfam Lytic transglycolase 59 144 IPR009009 -
HCH13g0595 246 Pfam Expansin C-terminal domain 155 232 IPR007117 -
HCH13g0595 246 PANTHER EXPANSIN-A15 23 246 IPR002963 GO:0009664(InterPro)
HCH13g0595 246 Gene3D - 153 246 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0595 HCH-Chr13:4547515 HCH1g0914 HCH-Chr1:57522355 6.90E-110 dispersed
HCH1g0288 HCH-Chr1:45418363 HCH13g0595 HCH-Chr13:4547515 1.60E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0595 - - - 0.0