Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0598 ATGGGTAAGGAGAAGGTTCACATCAACATTGTTGTCATTGGCCATGTCGACTCTGGAAAGTCGACCACCACTGGTCATTTGATTTACAAGCTTGGAGGAATTGACAAGCGTGTTATTGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGTTGGACAAACTGAAGGCTGAGCGCGAGCGTGGTATCACTATCGATATTGCCTTGTGGAAGTTTGAGACCACCAAGTACTACTGCACTGTTATCGATGCTCCAGGCCATCGTGATTTCATAAAAAACATCATTGTACTGTTAGTAGTGCAGGCTGGAGAAGAGACTGAACTACTTGTTGGACTGAAAAATGATGGTTTTCAACAGTGCATCGGTGTCACCATCAACCCAAGCTACTTTCCCATACATATTCACTGTCAGCAAGTACTTGCAGCCTGGAAACTTTGA 462 44.37 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNIIVLLVVQAGEETELLVGLKNDGFQQCIGVTINPSYFPIHIHCQQVLAAWKL 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4581108 4582263 + evm.model.ptg000021l.598 HCH13g0598 557103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0598 153 Gene3D - 1 116 IPR027417 -
HCH13g0598 153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 112 IPR027417 -
HCH13g0598 153 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
HCH13g0598 153 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH13g0598 153 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH13g0598 153 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH13g0598 153 Pfam Elongation factor Tu GTP binding domain 6 104 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH13g0598 153 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 153 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH13g0598 153 PANTHER TRANSLATION FACTOR 4 104 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
HCH13g0598 153 FunFam Elongation factor 1-alpha 1 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0598 HCH-Chr13:4581108 HCH7g1431 HCH-Chr7:47027301 5.10E-55 dispersed
HCH13g0598 HCH-Chr13:4581108 HCH6g1411 HCH-Chr6:47944001 3.90E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0598 K03231 - mtr:25484951 211.46