Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0600 ATGCTGGCGTTTTTGAAGATGATAAGGTTGTTGGAATTTTTCATTTTGTTAATTATGGTTCCTATGTTTGTGGGATCTTTGAATCCTTCTCTAAATGATGATGTCTTAGGTTTAATAGTGTTTAAGGCTGATATTGAAGATCCAAAAGGCAAACTTTTGTCTTGGAATGAAGATGATGATAGTCCCTGTAATTGGGTTGGTGTTAAATGCAACCCCAGATCCAATAGAGTTGTTGAGATTAACCTTGATGGTTTCTCTCTTTCGGGCCGCCTCGGCCGGGGGCTTCTTCAGTTGCAGTTTCTAAGGAAACTGATTCTTTCTAATAACAATCTTACTGGGAGTTTAAGTCCTAATAATGCTCGGTTTGATAATCTTCGTGTTGTCGATTTAAGCGGTAATGGCTTCTCTGGGACGGTACCGGAGGATTTCTTTAGGCAATGTGGGTCACTGAGAGTGATATCTTTAGCTAGAAACAAGTTTTCTGGGAAAATTCCTGATAGTTTAGGCTCTTGTTCTAGTATCGCTTCTATTAACTTGTCTTCCAATCAGTTTTTGGGTTCGTTGCCTGCTGGGATTTGGTCCTTCAATGGACTAAGGTCTTTGGATTTGTCTGATAACTTGTTAGAAGGTGAAATTCCCAAGGAAGTTAAGGTTATGAATAATTTGAGAAGTATTAATTTGGGGAAGAATCGATTTTCCGGGCATATCCCGGATGGTATTGGGAGTTGTTTGCTTTTAAGGTCTATTGATGTTAGTGAAAATTCCTTTTCTGGGAGCTTACCAGAGACAATGCAGAGACTTAGTTTATGTAATAATCTGAGTTTAAGAAAAAACTTGTTTGAAGGTAAGCTTCCTGAATGGATTGGTGAAATGAAAAACCTTGAAATTTTGGATCTTTCAGGAAATAGATTTTCTGGTCAGGTTCCAAGTTCATATGGGAATCTCCAAAATCTGAAGATTCTGAATTTTTCTGAAAATAGCTTGACTGGTAGCTTGCCAGAATCAATAATTCCTTCCCAAAACCTTTCAGCCTCAGATCTCAGTCACAATTCTCTTACAGGAGTGCTTCCCGCATGGATTTTGAAGCTGGGTTCTCAAAATGTATTGCCTTCAGATACCAAAACTAGCTCTCTGTCTACAGTGGGGAAAGTACTTCATAATCTTCAAGTTCTGGATTTGTCTCACAATGCGTTTTCGGGCCAACTTTCACCTGACATTGGTATGTTAAGGAGCTTGGAGTTGTTGAACCTGTGTAAGAACTCATTGATTGGCTCTATTCCAAAAAGTATAGGAGAGCTGAAAGCCCTGGTTAGTCTTGATTTGAGCTGGAACCAGTTGAACGGTAGCGTTCCGGAAGAACTCGGTGGTTCTGTATCTTTGAAAGAGTTGAAACTGGAGAAGAACTTTCTGGAGGGTGAAATTCCAAATTCCATAGGGAACTGTTCTTCACTTGAAATCTTGGACATGTCTGAAAACAAATTATCTGGCTCCATCCCTGCAGCATTAGCAAAACTAACAAATCTTCAAATTGTGGACTTATCAATAAACAATCTTGGTGGTGCACTGCCAAAGCAGTTGGCCAATCTTCCCAACCTTCTTTCATTTAATATTTCTCACAACAGTCTCCAGGGCGAACTGCCTGCCGGTGGCTTTTTCAACACAATCTCGCCATCCTCTGTCGCCGGAAATCCATCTCTCTGTGGCTCTATAGTCAAGAAGTCTTGCCCTGGAGTCCTTCCCAAACCTATTGTTCTCAACCCCAACTCATCTACTGACTCTGGTTCCACTACATTACCTTCAACTCTTGGTCACAAAAAGATCATCCTGAGCATCTCTGCACTTATTGCCATTGGTGCAGCTGCAGTTATCCTTGTTGGTGTGATTGCTATCACCGTCCTTAATTTCCATGTTCGGTCATCTGAAAATCATACTGCAGGAGCCATCACATTTTCTGCAGGGGATGACTTCAGCCATTCCCCAACTACAGATGCCAATTCTGGCAAGCTGGTCATGTTCTCGGGAGAGCCTGACTTCAGTACTGGAGCACACGCCCTACTTAACAAGGATTGCGAACTTGGTCGTGGTGGATTCGGAGCAGTTTATCAAACTGTTCTACGTGACGGTCATCCAGTTGCAATAAAGAAGCTCACTGTTTCAAGTCTTGTCAAGTCTCAAGATGAGTTTGAAAGAGAGGTTAAGAAATTGGGCAAGGTTAGGCATCAAAATCTCGTGGCCCTAGATGGTTATTACTGGACTCCATCTTTGCAGCTCCTCATATATGAGTTTATTTCTGGAGGGAGTTTATATAAGCATCTTCATGAAGGAATTGGCGGAAACTTCCTCTCATGGAATGAAAGGTTCAACATAATCCTTGGAACAGCAAAAAGCTTGGCTCATTTGCACCACTTGAACATAATCCACTACAATATTAAATCAAGCAATGTCCTGATCGACAGCTCGGGCGAGCCTAAAGTTGGAGATTTTGGCCTAGCAAGATTGCTACCAATGCTTGACCGTTATGTGTTAAGTAGCAAGATACAGAGTGCACTTGGCTACATGGCTCCCGAGTTCGCCTGCAAAACAGTTAAGATAACAGAGAAATGTGATGTATATGGATTTGGAGTTCTGGTTCTTGAGGTGGTAACTGGGAAGAGACCTGTAGAGTACATGGAAGACGATGTGGTGGTCCTCTGTGATATGGTCAGAAGGGCCTTGGAAGAAGGCAGGGTGGAGGAATGCATTGATGAGAGACTGCAGAGGAATTTCCCATCTGAGGAGGCAATACCAGTTGTGAAACTAGGCTTGATATGCACCTCTCAGGTGCCATCAAACCGCCCGGATATGACCGAGGTTGTTAATATATTAGAGCTGATCAGATGTCCATCAGAAGGCCAAGAAGAATTGGGATAA 2910 42.1 MLAFLKMIRLLEFFILLIMVPMFVGSLNPSLNDDVLGLIVFKADIEDPKGKLLSWNEDDDSPCNWVGVKCNPRSNRVVEINLDGFSLSGRLGRGLLQLQFLRKLILSNNNLTGSLSPNNARFDNLRVVDLSGNGFSGTVPEDFFRQCGSLRVISLARNKFSGKIPDSLGSCSSIASINLSSNQFLGSLPAGIWSFNGLRSLDLSDNLLEGEIPKEVKVMNNLRSINLGKNRFSGHIPDGIGSCLLLRSIDVSENSFSGSLPETMQRLSLCNNLSLRKNLFEGKLPEWIGEMKNLEILDLSGNRFSGQVPSSYGNLQNLKILNFSENSLTGSLPESIIPSQNLSASDLSHNSLTGVLPAWILKLGSQNVLPSDTKTSSLSTVGKVLHNLQVLDLSHNAFSGQLSPDIGMLRSLELLNLCKNSLIGSIPKSIGELKALVSLDLSWNQLNGSVPEELGGSVSLKELKLEKNFLEGEIPNSIGNCSSLEILDMSENKLSGSIPAALAKLTNLQIVDLSINNLGGALPKQLANLPNLLSFNISHNSLQGELPAGGFFNTISPSSVAGNPSLCGSIVKKSCPGVLPKPIVLNPNSSTDSGSTTLPSTLGHKKIILSISALIAIGAAAVILVGVIAITVLNFHVRSSENHTAGAITFSAGDDFSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQDEFEREVKKLGKVRHQNLVALDGYYWTPSLQLLIYEFISGGSLYKHLHEGIGGNFLSWNERFNIILGTAKSLAHLHHLNIIHYNIKSSNVLIDSSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRALEEGRVEECIDERLQRNFPSEEAIPVVKLGLICTSQVPSNRPDMTEVVNILELIRCPSEGQEELG 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4595342 4598558 - evm.model.ptg000021l.600 HCH13g0600 557105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0600 969 Gene3D Ribonuclease Inhibitor 32 310 IPR032675 -
HCH13g0600 969 SUPERFAMILY L domain-like 122 559 - -
HCH13g0600 969 Pfam Leucine rich repeat 387 446 IPR001611 GO:0005515(InterPro)
HCH13g0600 969 Pfam Leucine rich repeat 459 518 IPR001611 GO:0005515(InterPro)
HCH13g0600 969 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515(InterPro)
HCH13g0600 969 ProSiteProfiles Protein kinase domain profile. 686 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0600 969 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 763 964 - -
HCH13g0600 969 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 311 579 - -
HCH13g0600 969 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 32 310 - -
HCH13g0600 969 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 680 762 - -
HCH13g0600 969 Gene3D Transferase(Phosphotransferase) domain 1 763 967 - -
HCH13g0600 969 SUPERFAMILY Protein kinase-like (PK-like) 689 959 IPR011009 -
HCH13g0600 969 Gene3D Phosphorylase Kinase; domain 1 679 762 - -
HCH13g0600 969 Pfam Protein tyrosine and serine/threonine kinase 688 954 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0600 969 PANTHER OS04G0122200 PROTEIN 52 159 IPR051809 -
HCH13g0600 969 CDD STKc_IRAK 692 958 - -
HCH13g0600 969 SMART LRR_typ_2 433 457 IPR003591 -
HCH13g0600 969 SMART LRR_typ_2 315 339 IPR003591 -
HCH13g0600 969 SMART LRR_typ_2 385 409 IPR003591 -
HCH13g0600 969 SMART LRR_typ_2 505 528 IPR003591 -
HCH13g0600 969 SMART LRR_typ_2 219 243 IPR003591 -
HCH13g0600 969 SMART LRR_typ_2 122 146 IPR003591 -
HCH13g0600 969 SMART LRR_typ_2 291 314 IPR003591 -
HCH13g0600 969 SMART LRR_typ_2 529 553 IPR003591 -
HCH13g0600 969 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
HCH13g0600 969 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524(InterPro)
HCH13g0600 969 Pfam Leucine Rich Repeat 198 216 IPR001611 GO:0005515(InterPro)
HCH13g0600 969 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
HCH13g0600 969 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515(InterPro)
HCH13g0600 969 Pfam Leucine Rich Repeat 317 336 IPR001611 GO:0005515(InterPro)
HCH13g0600 969 Pfam Leucine Rich Repeat 293 315 IPR001611 GO:0005515(InterPro)
HCH13g0600 969 Gene3D Ribonuclease Inhibitor 311 579 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0600 HCH-Chr13:4595342 HCH1g0271 HCH-Chr1:44278625 1.70E-167 dispersed
HCH11g0019 HCH-Chr11:678996 HCH13g0600 HCH-Chr13:4595342 2.60E-176 transposed
HCH1g0270 HCH-Chr1:44202653 HCH13g0600 HCH-Chr13:4595342 4.20E-219 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81171 PF00069 Pkinase 7.60E-41 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0600 - - - 0.0