Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0628 ATGGCTTCACCTTCTCCAAGTCTTTTGCCTCCTGGGGATCCATTAGATTCCACAACTTCACCACCTTCTCCCTCGCCTCCGGCCGAGTCTTCAATCCCTCCCTCATCTCCTACATCTTCGATTCCTAGTCAAACCGCTAAGCCTCCTTCAACACCTTCCAGTCCTTCAGCACCAGTTCCTTTGTCACCACCAGTAGTTCCTGCTGCTGTTCCTCCTTCTCCTCCTTCGCCTCCACCACCAACACCTTCACCGCTTACACCATCGACATCCCCACCTCCTTCTACACCTGTTGTTTTACCACCATTGTTATCTCCACCCCCACCACCTCCTTCAACATTGCCCTCACCTCCACTAGATTCGACAACACCCCCTCCACCTTCCTCGGTGTCACCACCTCCACCACCATCTACTGTCTCTCCTCCTCCTCCTCCTGCTGCTGTAGATTCACCTCCCCCTCCTGATTCATCACCTCCTCCACCAGCAGATAATTCTCCACCTCCTCCACCAGCAGATAATTCTCCACCTCCCCAATCCAATCCTACTCCTACACCTCCAGTTTCAACTTCCCCTCCTCCTCCTCCTCCTCCTCACCATCATAGAATTTCACCTTCTCCACCACCACCAACCAATGTCCCAACACCACCTTCTTCGATTTCCCCACCTCCACCACCAGATGGACAATCGCCGATAACATCTCCTCAACCCCCCAAGCTTTCACCTCCTTCTCCTCCTTCTCAATCTCCACCTCCAGTTGCTGCCACTCCACCAGGATCCACATTACCATCACCTCCCCCTTCAGTCCATTCACCATTTGCTCCTCCAAATTCTGTTCCCGCTCATCCCACTAATTCATCTGGTGGAAGTCCTACTACCCCACCCACATCTTCTGTTACACCAGAACAACCAAATCCAACAAGCAACGGTACCAATGCAAATGAAAAGGCAAATAACTCAACCACAGATAGAAGAGGCTCAAGCACTGCAACATCTGTGGCAGTTGCTAGCGTGATTGGTGTTCTTGTGCTGAGTCTTGTGATCCTGGCAGTATGGTTTATTCAAAAAAGAAAGAGAAGAAAGAAGAATGTGCTCTATACCATGCCTTCTCCCTTTTCCTCCCAAAATTCAGATTCATTTTTTCTAAGGCCCCAGACTTCAGCTCCTCTGGTTGGAAGTCGTGCTGATAGTGATTTTAAGTTTTCATCATCAGAGGGAGGTGGAGTAGGTAATTCAAGAGGGTTTTCTTATGAAGAGCTACTCCAGGCAACAGGTGGGTTTTCATCAAAGAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTACAAAGGCACCCTTGCAGATGGAAGAGAGGTAGCTGTTAAACAACTTAAAGTTGGTGGTGGACAAGGAGAACGGGAGTTCAGAGCAGAAGTTGAAATTATTAGCCGAGTACATCATCGGCATCTGGTTTCCCTGGTCGGTTACTGCATCTCTGATTATCAAAGACTGCTTGTATATGATTATGTTCCCAACGATACTCTTCATTACCATTTGCATGGCGAGAACAGGCCAGTTTTAGCTTGGGCTACACGTGTCCGAATTGCAGCTGGTGCAGCCCGTGGCATTGCTTATCTACATGAAGACTGCCATCCACGCATTATTCACAGGGATATTAAGTCATCAAACATTCTGCTTGATATCAACTTTGAAGCCCAGGTTGCAGATTTTGGCCTTGCTAAGTTAGCATTGGATTCACATACACATGTAACGACTCGTGTAATGGGAACCTTTGGATACATGGCTCCAGAATATGCAACAAGTGGAAAGTTGACTGATAAGTCTGATGTTTACTCTTATGGAGTTGTACTTTTGGAGCTAATTACTGGTCGCAAGCCTGTAGATTCCTCCCAGCCGTTGGGGGATGAGAGCTTAGTTGAATGGGCTCGACCTTTGCTTACACAAGCCATTGAGGATGAGAATTTCGATGAATTGGTGGATCCAATGCTGGACAAGAATTATGTTGACAGGGAAATGTTTCGGATGATTGAAGCCGCCGCTGCTTGTATTCGTCATTCAGCTGTAAAAAGGCCAAGAATGAGTCAGGTGGTGAGAGCTTTAGACTCTTTAGATGAAATGTCAGATCTTGCTAATGGGGTGAAACCTGGGCAAAGTGGAGTGTTTAATTCAGCAGAACATTCTGCCCAGATCAGATTGTTTCAGAGAATGGCTTTTGGCAGTCAAGACTACAGTTCCGATCGAAGTCGAAGCCAAAGCCAGAGTAGCTGGAGTAGAGAATCAAGAGATCAAAGTCCGACAGCGCTTATTAATCGATCCCGGTTGTTCCACAACTGA 2328 47.51 MASPSPSLLPPGDPLDSTTSPPSPSPPAESSIPPSSPTSSIPSQTAKPPSTPSSPSAPVPLSPPVVPAAVPPSPPSPPPPTPSPLTPSTSPPPSTPVVLPPLLSPPPPPPSTLPSPPLDSTTPPPPSSVSPPPPPSTVSPPPPPAAVDSPPPPDSSPPPPADNSPPPPPADNSPPPQSNPTPTPPVSTSPPPPPPPHHHRISPSPPPPTNVPTPPSSISPPPPPDGQSPITSPQPPKLSPPSPPSQSPPPVAATPPGSTLPSPPPSVHSPFAPPNSVPAHPTNSSGGSPTTPPTSSVTPEQPNPTSNGTNANEKANNSTTDRRGSSTATSVAVASVIGVLVLSLVILAVWFIQKRKRRKKNVLYTMPSPFSSQNSDSFFLRPQTSAPLVGSRADSDFKFSSSEGGGVGNSRGFSYEELLQATGGFSSKNLLGEGGFGCVYKGTLADGREVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNDTLHYHLHGENRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVYSYGVVLLELITGRKPVDSSQPLGDESLVEWARPLLTQAIEDENFDELVDPMLDKNYVDREMFRMIEAAAACIRHSAVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFNSAEHSAQIRLFQRMAFGSQDYSSDRSRSQSQSSWSRESRDQSPTALINRSRLFHN 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4892828 4898672 - evm.model.ptg000021l.628 HCH13g0628 557133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0628 775 CDD STKc_IRAK 431 701 - -
HCH13g0628 775 MobiDBLite consensus disorder prediction 740 769 - -
HCH13g0628 775 ProSiteProfiles Protein kinase domain profile. 425 686 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0628 775 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 293 734 IPR047117 -
HCH13g0628 775 PRINTS Proline rich extensin signature 33 49 - -
HCH13g0628 775 PRINTS Proline rich extensin signature 6 27 - -
HCH13g0628 775 PRINTS Proline rich extensin signature 54 71 - -
HCH13g0628 775 PRINTS Proline rich extensin signature 75 100 - -
HCH13g0628 775 FunFam Proline-rich receptor-like protein kinase PERK8 398 500 - -
HCH13g0628 775 MobiDBLite consensus disorder prediction 740 775 - -
HCH13g0628 775 Gene3D Phosphorylase Kinase; domain 1 397 500 - -
HCH13g0628 775 Pfam Protein kinase domain 426 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0628 775 FunFam proline-rich receptor-like protein kinase PERK8 501 713 - -
HCH13g0628 775 MobiDBLite consensus disorder prediction 1 33 - -
HCH13g0628 775 ProSitePatterns Protein kinases ATP-binding region signature. 431 453 IPR017441 GO:0005524(InterPro)
HCH13g0628 775 MobiDBLite consensus disorder prediction 48 277 - -
HCH13g0628 775 MobiDBLite consensus disorder prediction 1 326 - -
HCH13g0628 775 SMART serkin_6 425 681 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0628 775 MobiDBLite consensus disorder prediction 278 326 - -
HCH13g0628 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 545 557 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0628 775 Gene3D Transferase(Phosphotransferase) domain 1 501 713 - -
HCH13g0628 775 SUPERFAMILY Protein kinase-like (PK-like) 408 698 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0894 HCH-Chr11:39884252 HCH13g0628 HCH-Chr13:4892828 6.30E-65 dispersed
HCH13g0628 HCH-Chr13:4892828 HCH8g0750 HCH-Chr8:44129632 4.10E-124 dispersed
HCH2g1189 HCH-Chr2:54393427 HCH13g0628 HCH-Chr13:4892828 3.60E-65 dispersed
HCH8g0953 HCH-Chr8:45722689 HCH13g0628 HCH-Chr13:4892828 2.70E-43 dispersed
HCH1g1033 HCH-Chr1:58269519 HCH13g0628 HCH-Chr13:4892828 1.00E-143 transposed
HCH7g0254 HCH-Chr7:1751507 HCH13g0628 HCH-Chr13:4892828 3.20E-63 transposed
HCH1g0825 HCH-Chr1:56890772 HCH13g0628 HCH-Chr13:4892828 5.00E-158 wgd
HCH13g0628 HCH-Chr13:4892828 HCH2g1078 HCH-Chr2:53743850 1.30E-64 wgd
HCH13g0628 HCH-Chr13:4892828 HCH3g1512 HCH-Chr3:53092133 1.60E-61 wgd
HCH13g0628 HCH-Chr13:4892828 HCH9g0850 HCH-Chr9:6038184 1.90E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81172 PF00069 Pkinase 2.60E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0628 - - - 0.0