Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0646 ATGTCAGACACGGGTGAAAATCAGCAGCCTGAACAAGTCTGCAGCTTCTTCAGAAAACCAACGAAGAACAAAAACATTAGAAAACGGGTAGTTGATGAAGATGAAGATGAGGACTCTAAAACCGATAATTCCTCGTTGCTTAGCCAGAAGAAAAACCCCAAGACTGAAAGCAAGCTTTACTTTTCTTCTGGACCCACTAGAAGTACCTTACCTAAGGAGTCAAATGTGGAATCTGATAAAACAATTTTCCAATTTGAGTCCTCGAAGGAAATTCAAGTTCACCATGATAGCAAAGCGACTGCGACGCTAGAAACCGAGACGGACTTTTCGAGAGATGCACGGGCAATCCGTGAGAGAGTCTTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAATAAAGGCAAGGGTACTGGGAGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTGGATTACAAGGCTGGGTTCCGTCGAGAACAGACGATTTCGAGTGAAAAAGCCGGTGGATCCCATGGCCCACTTAGGGCTTCTGCTCATATTAGAGCTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATTCATGCAAGTTTATGCATGACCGTGGGGATTATAAATCTGGGTGGCAGATGGAAAAGGAATGGCAGGAAGCAGAAAAAGAAAGGAAGAGAAAATTAGCCATGGGATCTAATGACGATGATGACGATGCTGCTGACCAGAGTGATGAAGACGACGAGGATGCCTTGCCTTTTGCATGTTTTATTTGTAGGGAGCCGTTTGTAGATCCTGTTATGACCAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGCATCATGCAAAGAACAAGAAATGCTTCGTCTGCAACCAACCTACACTCGGGATCTTTAATGCGGCTCTTGAGATACGGAAAAAGATGGCTTCACAAAGGAAGGATAGTGGAAAGTTTGAACGGGGCGAGGCTGAGTAG 1008 44.25 MSDTGENQQPEQVCSFFRKPTKNKNIRKRVVDEDEDEDSKTDNSSLLSQKKNPKTESKLYFSSGPTRSTLPKESNVESDKTIFQFESSKEIQVHHDSKATATLETETDFSRDARAIRERVLKQAEEALKGNKGKGTGSEKLYKGVNAYVDYKAGFRREQTISSEKAGGSHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWQEAEKERKRKLAMGSNDDDDDAADQSDEDDEDALPFACFICREPFVDPVMTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNAALEIRKKMASQRKDSGKFERGEAE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5051430 5053611 + evm.model.ptg000021l.646 HCH13g0646 557151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0646 335 ProSiteProfiles Zinc finger C3H1-type profile. 186 214 IPR000571 GO:0046872(InterPro)
HCH13g0646 335 MobiDBLite consensus disorder prediction 45 77 - -
HCH13g0646 335 CDD RING-HC_RNF113A_B 257 310 - -
HCH13g0646 335 MobiDBLite consensus disorder prediction 231 254 - -
HCH13g0646 335 ProSitePatterns Zinc finger RING-type signature. 279 288 IPR017907 -
HCH13g0646 335 MobiDBLite consensus disorder prediction 1 77 - -
HCH13g0646 335 Gene3D - 184 218 - -
HCH13g0646 335 SUPERFAMILY RING/U-box 263 306 - -
HCH13g0646 335 FunFam Zinc finger CCCH domain-containing protein 1 184 218 - -
HCH13g0646 335 PANTHER ZINC FINGER PROTEIN 183 12 328 IPR039971 GO:0005684(PANTHER)|GO:0034247(PANTHER)
HCH13g0646 335 SMART ring_2 264 301 IPR001841 -
HCH13g0646 335 MobiDBLite consensus disorder prediction 1 19 - -
HCH13g0646 335 SMART c3hfinal6 186 213 IPR000571 GO:0046872(InterPro)
HCH13g0646 335 SUPERFAMILY CCCH zinc finger 185 217 IPR036855 GO:0046872(InterPro)
HCH13g0646 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 321 IPR013083 -
HCH13g0646 335 FunFam RING finger protein 113A 262 321 - -
HCH13g0646 335 ProSiteProfiles Zinc finger RING-type profile. 264 302 IPR001841 -
HCH13g0646 335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 187 212 IPR000571 GO:0046872(InterPro)
HCH13g0646 335 Pfam Zinc finger, C3HC4 type (RING finger) 263 305 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32811 PF13920 zf-C3HC4_3 7.20E-09 CL0229 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0646 K13127 - csv:101221334 547.74