Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g0646 | ATGTCAGACACGGGTGAAAATCAGCAGCCTGAACAAGTCTGCAGCTTCTTCAGAAAACCAACGAAGAACAAAAACATTAGAAAACGGGTAGTTGATGAAGATGAAGATGAGGACTCTAAAACCGATAATTCCTCGTTGCTTAGCCAGAAGAAAAACCCCAAGACTGAAAGCAAGCTTTACTTTTCTTCTGGACCCACTAGAAGTACCTTACCTAAGGAGTCAAATGTGGAATCTGATAAAACAATTTTCCAATTTGAGTCCTCGAAGGAAATTCAAGTTCACCATGATAGCAAAGCGACTGCGACGCTAGAAACCGAGACGGACTTTTCGAGAGATGCACGGGCAATCCGTGAGAGAGTCTTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAATAAAGGCAAGGGTACTGGGAGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTGGATTACAAGGCTGGGTTCCGTCGAGAACAGACGATTTCGAGTGAAAAAGCCGGTGGATCCCATGGCCCACTTAGGGCTTCTGCTCATATTAGAGCTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATTCATGCAAGTTTATGCATGACCGTGGGGATTATAAATCTGGGTGGCAGATGGAAAAGGAATGGCAGGAAGCAGAAAAAGAAAGGAAGAGAAAATTAGCCATGGGATCTAATGACGATGATGACGATGCTGCTGACCAGAGTGATGAAGACGACGAGGATGCCTTGCCTTTTGCATGTTTTATTTGTAGGGAGCCGTTTGTAGATCCTGTTATGACCAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGCATCATGCAAAGAACAAGAAATGCTTCGTCTGCAACCAACCTACACTCGGGATCTTTAATGCGGCTCTTGAGATACGGAAAAAGATGGCTTCACAAAGGAAGGATAGTGGAAAGTTTGAACGGGGCGAGGCTGAGTAG | 1008 | 44.25 | MSDTGENQQPEQVCSFFRKPTKNKNIRKRVVDEDEDEDSKTDNSSLLSQKKNPKTESKLYFSSGPTRSTLPKESNVESDKTIFQFESSKEIQVHHDSKATATLETETDFSRDARAIRERVLKQAEEALKGNKGKGTGSEKLYKGVNAYVDYKAGFRREQTISSEKAGGSHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWQEAEKERKRKLAMGSNDDDDDAADQSDEDDEDALPFACFICREPFVDPVMTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNAALEIRKKMASQRKDSGKFERGEAE | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5051430 | 5053611 | + | evm.model.ptg000021l.646 | HCH13g0646 | 557151 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g0646 | 335 | ProSiteProfiles | Zinc finger C3H1-type profile. | 186 | 214 | IPR000571 | GO:0046872(InterPro) | |
HCH13g0646 | 335 | MobiDBLite | consensus disorder prediction | 45 | 77 | - | - | |
HCH13g0646 | 335 | CDD | RING-HC_RNF113A_B | 257 | 310 | - | - | |
HCH13g0646 | 335 | MobiDBLite | consensus disorder prediction | 231 | 254 | - | - | |
HCH13g0646 | 335 | ProSitePatterns | Zinc finger RING-type signature. | 279 | 288 | IPR017907 | - | |
HCH13g0646 | 335 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - | |
HCH13g0646 | 335 | Gene3D | - | 184 | 218 | - | - | |
HCH13g0646 | 335 | SUPERFAMILY | RING/U-box | 263 | 306 | - | - | |
HCH13g0646 | 335 | FunFam | Zinc finger CCCH domain-containing protein 1 | 184 | 218 | - | - | |
HCH13g0646 | 335 | PANTHER | ZINC FINGER PROTEIN 183 | 12 | 328 | IPR039971 | GO:0005684(PANTHER)|GO:0034247(PANTHER) | |
HCH13g0646 | 335 | SMART | ring_2 | 264 | 301 | IPR001841 | - | |
HCH13g0646 | 335 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
HCH13g0646 | 335 | SMART | c3hfinal6 | 186 | 213 | IPR000571 | GO:0046872(InterPro) | |
HCH13g0646 | 335 | SUPERFAMILY | CCCH zinc finger | 185 | 217 | IPR036855 | GO:0046872(InterPro) | |
HCH13g0646 | 335 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 262 | 321 | IPR013083 | - | |
HCH13g0646 | 335 | FunFam | RING finger protein 113A | 262 | 321 | - | - | |
HCH13g0646 | 335 | ProSiteProfiles | Zinc finger RING-type profile. | 264 | 302 | IPR001841 | - | |
HCH13g0646 | 335 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 187 | 212 | IPR000571 | GO:0046872(InterPro) | |
HCH13g0646 | 335 | Pfam | Zinc finger, C3HC4 type (RING finger) | 263 | 305 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32811 | PF13920 | zf-C3HC4_3 | 7.20E-09 | CL0229 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g0646 | K13127 | - | csv:101221334 | 547.74 |