Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0647 ATGGGAATGAAGAGAATAGAGGCTGTTGCTGCTGCTTGGTTTTTTGTCACTTCTTTATTGTTTTCTGCTTCTGCAATTAATGCCTTGCTATCTCCCAAAGGTGTAAACTATGAAGTGCAAGCTTTAATGGGCATAAAAGCTTCTTTGCAAGATCCTCATGGAGTGCTTGAGAATTGGGATGGAGATTCTGTTGACCCATGTAGCTGGACCATGGTTACTTGCTCTCCTGAGAGCCTAGTCATTGGCTTAGGTACTCCAAGCCAGAATTTATCTGGGACTCTATCATCAAGCATAGGGAATTTGACAAATCTTCAAATTGTGCTCTTGCAGAACAATAATATTACAGGTCCAATTCCCTTTGAGATTGGGAGGCTATCAAAGCTTCAAACACTTGATTTATCAAGCAACTTCTTCATTGAGGGAATTCCTTCCTCTTTAGGTCATTTGAGAAACCTACAGTACTTGAGGCTGAATAATAACAGTCTTTCTGGGGCATTTCCAATGTCATTAGCCAACATGACTCAGCTTGCTTTTCTTGATGTGTCTTATAATAATCTCAGTGGCCCTTTACCCAGATTTCCCAGCAAAACATTCAACATTGTTGGGAACCCTCTGATCTGTGCAACCGGGTCTGAAGCCGGCTGCCACGGGACAACACTTATGCCCATGTCCATGAATTTGAATAGTTCACAGACTTCATTACCTGCTGTGAGATTGAAGAGTCACAAAATGGCCCTTACATTTGGCTTGAGCCTTGCTTGCCTATGCCTAATTGTTCTTGTATTTGGCCTTTTTATATGGTGGAGAAATCGAAGCAATCAGCCCACGTTCTTCGATGTAAAAGACCGACAACACGAGGAAATTTCCCTTGGAAATCTGAGGAGATTCCAATTTAGAGAACTTCAGATAGCAACAAACAACTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTCTCAGATGGAACTATTGTAGCTGTTAAAAGACTCAAAGATGGTAATGCAAGTAGAGGTGAGATTCAATTTCAGACTGAAGTAGAGATGATCAGCCTAGCCGTGCACCGTCATCTCCTCAGACTATACGGGTTTTGCAATACACCAACGGAAAGGCTTCTTGTATATCCATATATGTCTAATGGAAGTGTTGCATTGCGTCTCAAAGGGAAACCAGTGTTAGACTGGGGAACAAGGAAGAGAATTGCAATAGGGGCTGCAAGGGGATTGTTATACCTCCATGAGCAATGTGACCCGAAAATAATACATAGGGATGTTAAGGCTGCAAATATACTTCTCGATGACTATTGCGAGGCCGTGGTTGGAGATTTTGGGTTGGCAAAGCTTCTGGATCATCAAGATTCACATGTTACGACTGCTGTGAGAGGCACGGTGGGACATATAGCTCCTGAGTATCTCTCTACTGGACAGTCTTCTGAGAAAACAGATGTTTTTGGATTTGGAATCTTGCTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAATTCGGCAAAGCAGCAAATCAGAAAGGCGGCATTCTTGATTGGGTGAAGAAAATTCACCAAGAGAAGAAGCTTGAAGTGCTAGTGGACAAGGATCTAAAGACAAATTATGACAGGATAGAATTGGAGGAAATGGTTCAAGTTGCTCTATTATGCACACAATATCTTCCAGGGCACAGGCCTAAAATGTCTGAAGTTGTAAGAATGCTTGAAGGAGAAGGGCTTGCTGTAAAATGGGAAGCTTCACAGAGAGTTGACACAATAAAATGCAAACCTCATGATTTCTCTTCATCAGACAGATATTCTGATCTCACAGATGATTCATCATTGTTAGTCCAAGCCATGGAGCTCTCTGGCCCAAGATGA 1887 42.24 MGMKRIEAVAAAWFFVTSLLFSASAINALLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSSSIGNLTNLQIVLLQNNNITGPIPFEIGRLSKLQTLDLSSNFFIEGIPSSLGHLRNLQYLRLNNNSLSGAFPMSLANMTQLAFLDVSYNNLSGPLPRFPSKTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNSSQTSLPAVRLKSHKMALTFGLSLACLCLIVLVFGLFIWWRNRSNQPTFFDVKDRQHEEISLGNLRRFQFRELQIATNNFSSKNILGKGGFGNVYKGILSDGTIVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVALRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHQEKKLEVLVDKDLKTNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVKWEASQRVDTIKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5064122 5067851 + evm.model.ptg000021l.647 HCH13g0647 557152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0647 628 Pfam Protein tyrosine and serine/threonine kinase 311 577 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0647 628 Pfam Leucine rich repeat 127 186 IPR001611 GO:0005515(InterPro)
HCH13g0647 628 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
HCH13g0647 628 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524(InterPro)
HCH13g0647 628 FunFam Somatic embryogenesis receptor kinase 1 277 384 - -
HCH13g0647 628 Gene3D Transferase(Phosphotransferase) domain 1 385 597 - -
HCH13g0647 628 FunFam Somatic embryogenesis receptor-like kinase 1 385 597 - -
HCH13g0647 628 Gene3D Ribonuclease Inhibitor 35 217 IPR032675 -
HCH13g0647 628 SUPERFAMILY L domain-like 37 200 - -
HCH13g0647 628 SMART serkin_6 308 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0647 628 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 628 - -
HCH13g0647 628 Gene3D Phosphorylase Kinase; domain 1 277 384 - -
HCH13g0647 628 FunFam Putative LRR receptor-like serine/threonine-protein kinase 35 217 - -
HCH13g0647 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0647 628 ProSiteProfiles Protein kinase domain profile. 308 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0647 628 Pfam Leucine Rich Repeat 103 125 IPR001611 GO:0005515(InterPro)
HCH13g0647 628 SUPERFAMILY Protein kinase-like (PK-like) 284 578 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1211 HCH-Chr10:43136147 HCH13g0647 HCH-Chr13:5064122 3.60E-216 dispersed
HCH13g0647 HCH-Chr13:5064122 HCH4g0034 HCH-Chr4:212341 1.40E-196 dispersed
HCH8g0968 HCH-Chr8:45826831 HCH13g0647 HCH-Chr13:5064122 5.80E-185 transposed
HCH8g1102 HCH-Chr8:46809016 HCH13g0647 HCH-Chr13:5064122 2.60E-18 transposed
HCH1g0837 HCH-Chr1:56965396 HCH13g0647 HCH-Chr13:5064122 3.00E-226 wgd
HCH13g0647 HCH-Chr13:5064122 HCH9g0691 HCH-Chr9:4607767 4.40E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81173 PF00069 Pkinase 5.70E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0647 - - - 0.0