Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g0661 | ATGGGTGCCGTCTGCTGCTGTTTGAGTGTGGAAGACTTTGAAGATTATGTTAATCCAAATAGTACTGTATATCGGAATTGCATCTGTATTAGTTGCTTCCTTCAGAACTTTTTAAATGTTTACACATTGATATTCCGAAGAGGAGAGGTACATCCCGTCTCTTCATCAATTCAAGGGGCGGCATCTATGACTACTGCAGCATCACTAGATAACTCATTATCTGAAATATATCGCTCTCCTCCAAGGCCTTTACCTTACGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGATTAATTTCAAGGCGCGAGAAGGGATCTAGCCATTTGCATGAGGAGTCGGAACCTTTAAGAAGTGAAGTAGATACAGATTCAGATTCTCTGGGCACAGCAGGCAAATGGAATGGATCTGCTTGTGTAGATGAATCTAAAGAAAATCTCAGCAAGTCATCTCTTAAGTTCTCTTCAGCAAAGTCAACTGCTGGAGCTGGTTATGCTTATACATCCTCTGAAGATGAGGATGTCTGCCCAACGTGTCTTGACGAATATACTCCAGAGAATCCCAAGATAATGACAAAATGCTTCCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGCAAGGTGATGGCATTTGATGAAACGACTTGA | 684 | 42.54 | MGAVCCCLSVEDFEDYVNPNSTVYRNCICISCFLQNFLNVYTLIFRRGEVHPVSSSIQGAASMTTAASLDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSEVDTDSDSLGTAGKWNGSACVDESKENLSKSSLKFSSAKSTAGAGYAYTSSEDEDVCPTCLDEYTPENPKIMTKCFHHFHLGCIYEWMERSDNCPVCGKVMAFDETT | 227 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 5257869 | 5261152 | + | evm.model.ptg000021l.661 | HCH13g0661 | 557166 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g0661 | 227 | CDD | RING-H2_AIRP1-like | 173 | 221 | - | - | |
| HCH13g0661 | 227 | MobiDBLite | consensus disorder prediction | 104 | 123 | - | - | |
| HCH13g0661 | 227 | Pfam | Ring finger domain | 176 | 217 | IPR001841 | - | |
| HCH13g0661 | 227 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 225 | IPR013083 | - | |
| HCH13g0661 | 227 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - | |
| HCH13g0661 | 227 | FunFam | E3 ubiquitin-protein ligase At3g02290-like | 154 | 224 | - | - | |
| HCH13g0661 | 227 | MobiDBLite | consensus disorder prediction | 104 | 127 | - | - | |
| HCH13g0661 | 227 | SUPERFAMILY | RING/U-box | 172 | 223 | - | - | |
| HCH13g0661 | 227 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 223 | - | GO:0004842(PANTHER) | |
| HCH13g0661 | 227 | SMART | ring_2 | 177 | 217 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g0661 | HCH-Chr13:5257869 | HCH5g0526 | HCH-Chr5:3600598 | 2.60E-18 | dispersed | |
| HCH13g0661 | HCH-Chr13:5257869 | HCH9g0329 | HCH-Chr9:2050335 | 1.50E-82 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g0661 | - | - | - | 0.0 |