Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0666 ATGGGTGTTTTAATGGTGATTTTTGTGGTCTTGGTTTTGGTTATTTGTTTGTGTTCTGCTTTGCTGAGATGGAATGAGGTCAGGTTTAGGAACAAAGGGTTGCCTCCTGGTACGATGGGTTGGCCTGTTTTTGGAGAAACTACTGAGTTTCTTAAACAAGGTCCCAACTTTATGAAAAATCAGAGAGCAAGGTATGGAAGTTTTTTCAAATCCCACATTCTGGGTTGTCCAACAATTATATCAATGGATCCAGAGGTGAACAGATATATTCTAATGAATGAATCGAGAGGTCTGGTTCCTGGGTACCCTCAGTCCATGCTTGATATTCTTGGGAAATGCAACATTGCTGCTGTCCATGGCACCCCCCACAGGCTCATGAGAGGAGCTCTCCTTGCCAGCATCAGCCCCATCATGATCAAAGATAGACTTTTGCCTAAAATTGATTCTTTTATGAGAACCCATTTGAGTAACTGGGAAAACAAAATCATCAATATCCAAGACAAGACCAAAGAGATGGCTATTCGTTCTTCTCTCAAGCAAGTTGCTGGCTTAGATTATGGTCCATTATCTGATTCATTTGTCACTGAGTTCTTCAAGCTTGTTGTTGGCACTATTTCCTTGCCTATTGATTTTCCCGGCACCGATTATCGCCGTGGAATTGATGCAAGAAAGAACATACTTAAACTTCTGGAGAAGCATATAAAAGAAAGAAGAGGATCAGGGGAAATGCATTATGACATGCTTGGATATTGGATGTGTGAGGAAGATGATAAATATAAGCTTAATGATGAACAAATTATTGATCAGATTATCACTGTTATGTATTCTGGTTATGAAACTGTTTCTGCTACTTCTATGATGGCTGTCAAATACCTCCATGACAATCCCAAATTTCTTCAACAATTGAGAGAAGAGCAATTTGCAATCAGAGAGAAGAAAAATCCTGAGGACCCAATTGGATGGGATGATATTAAAGCGATGAAATTCACTCGTGCGGTGGTATTTGAAACATCAAGAATGGCCACAATTGTTAATGGGGTGTTGAGAAAGACTACCAAGGATTTAGAACTTAATGGATTTGTGATTCCAAAAGGATGGAGGATATATGTGTATACAAGAGAGATAAACTATGACCCTTTTCTCTATTCTGAGCCTTTGACCTTCAACCCATGGAGATGGATGGACAAAAACTTGGAGTCTCATAATTACTTCTTCATGTTTGGAGGGGGCACAAGGCTTTGCCCTGGGAAAGAGTTGGGAATTGCAGAAATTGCTACTTTTCTACATTACTTTGTAACTAAATACAGGTGGGAAGAAGTTGGAGGAGACAAGCTGATGAAATTTCCAAGAGTTGAAGCCCCAAGTGGGCTCCACATTAGGGTTTCATCTTACTGA 1395 39.93 MGVLMVIFVVLVLVICLCSALLRWNEVRFRNKGLPPGTMGWPVFGETTEFLKQGPNFMKNQRARYGSFFKSHILGCPTIISMDPEVNRYILMNESRGLVPGYPQSMLDILGKCNIAAVHGTPHRLMRGALLASISPIMIKDRLLPKIDSFMRTHLSNWENKIINIQDKTKEMAIRSSLKQVAGLDYGPLSDSFVTEFFKLVVGTISLPIDFPGTDYRRGIDARKNILKLLEKHIKERRGSGEMHYDMLGYWMCEEDDKYKLNDEQIIDQIITVMYSGYETVSATSMMAVKYLHDNPKFLQQLREEQFAIREKKNPEDPIGWDDIKAMKFTRAVVFETSRMATIVNGVLRKTTKDLELNGFVIPKGWRIYVYTREINYDPFLYSEPLTFNPWRWMDKNLESHNYFFMFGGGTRLCPGKELGIAEIATFLHYFVTKYRWEEVGGDKLMKFPRVEAPSGLHIRVSSY 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5296722 5299602 - evm.model.ptg000021l.666 HCH13g0666 557171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0666 464 Gene3D Cytochrome P450 25 462 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0666 464 PANTHER CYTOCHROME P450 26 34 435 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)
HCH13g0666 464 SUPERFAMILY Cytochrome P450 28 444 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0666 464 Pfam Cytochrome P450 35 448 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0666 464 CDD CYP90-like 61 462 - -
HCH13g0666 464 FunFam Cytochrome P450 85A1 25 463 - -
HCH13g0666 464 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 407 416 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH13g0666 464 PRINTS E-class P450 group I signature 414 437 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0666 464 PRINTS E-class P450 group I signature 331 349 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0666 464 PRINTS E-class P450 group I signature 371 395 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0666 464 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0666 464 PRINTS E-class P450 group I signature 404 414 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0666 HCH-Chr13:5296722 HCH1g0373 HCH-Chr1:51158760 5.90E-78 dispersed
HCH13g0666 HCH-Chr13:5296722 HCH4g1474 HCH-Chr4:11150924 2.20E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0666 K09590 - csv:101206858 791.186