Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g0668 | ATGGCTGCGGATTCTTCTCGAATTCAAACGTTTGGTCAAACCGAGATTAATTGGGATAAGCTTGATAAAACTAAATTTTATGGCGTAGGAGCTGGTCTCTTTACAGGGGTTACAGTTGCACTGTACCCAGTCTCTGTTATAAAAACAAGGTTGCAGGTTGCTGTAAGGGACTCTGCTGAGAAAAATGCATTGTCTGTTATCAAAGGCATACTGAAAAATGATGGGGTTCCTGGTCTCTACAGAGGGTTTGGTACAGTAATCACTGGTGCTATTCCTGCAAGGATAATCTTCCTTACTGCTTTAGAGACGACCAAAGTGGGAACTTTAAAAATTGTCGAGCCTCTCAAATTTTCTGAACCGGTACAGGCAGCACTAGCAAATGGATTAGCTGGCATGACTGCATCACTTTTTTCTCAAGCTGTTTTTGTTCCAATTGACGTGATTAGTCAAAAGCTGATGGTTCAAGGATACTCAGGCTATGCAAGTTATAATGGAGGTTTAGATGTTGCTCGTAAAGTAATCAAGTCTGATGGAATCCGGGGACTATATAGAGGTTTTGGGTTATCTGTTATGACTTACTCTCCATCTAGTGCTGTATGGTGGGCTAGCTATGGTGCAAGTCAACGTGTCATCTGGAGGTTTTTAGGCCAAAATTCTGCTTCTGAGGAGTCTGCTCCTAGCCAAGCCAAACTTGTGTTAGTTCAAGCTGCTGGCGGTATAATTGCAGGTGCCACAGCTTCCTGCATTACAACACCGTTGGACACCATAAAGACTCGCTTGCAGGTGATGGGGCTTGATAAAAGAAAGACAGCAAGACAAGTTGTTGATCGCTTAATTGCAGAGGAAGGATGGAAAGGTTTTTATAGGGGGCTGGGTCCTCGGTTTTTCAGCATGTCAGCCTGGGGAACCTCAATGATATTGGCTTACGAGTACTTGAAACGCTTGTGTGCAAAAGACGACCAGACGTGA | 969 | 43.76 | MAADSSRIQTFGQTEINWDKLDKTKFYGVGAGLFTGVTVALYPVSVIKTRLQVAVRDSAEKNALSVIKGILKNDGVPGLYRGFGTVITGAIPARIIFLTALETTKVGTLKIVEPLKFSEPVQAALANGLAGMTASLFSQAVFVPIDVISQKLMVQGYSGYASYNGGLDVARKVIKSDGIRGLYRGFGLSVMTYSPSSAVWWASYGASQRVIWRFLGQNSASEESAPSQAKLVLVQAAGGIIAGATASCITTPLDTIKTRLQVMGLDKRKTARQVVDRLIAEEGWKGFYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKDDQT | 322 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 5330930 | 5335719 | + | evm.model.ptg000021l.668 | HCH13g0668 | 557173 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g0668 | 322 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J | 10 | 321 | - | - | |
| HCH13g0668 | 322 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 122 | 210 | IPR018108 | - | |
| HCH13g0668 | 322 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 19 | 107 | IPR018108 | - | |
| HCH13g0668 | 322 | Pfam | Mitochondrial carrier protein | 233 | 318 | IPR018108 | - | |
| HCH13g0668 | 322 | Pfam | Mitochondrial carrier protein | 31 | 105 | IPR018108 | - | |
| HCH13g0668 | 322 | Pfam | Mitochondrial carrier protein | 124 | 211 | IPR018108 | - | |
| HCH13g0668 | 322 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 230 | 315 | IPR018108 | - | |
| HCH13g0668 | 322 | SUPERFAMILY | Mitochondrial carrier | 19 | 312 | IPR023395 | - | |
| HCH13g0668 | 322 | PRINTS | Mitochondrial carrier protein signature | 239 | 261 | IPR002067 | GO:0055085(InterPro) | |
| HCH13g0668 | 322 | PRINTS | Mitochondrial carrier protein signature | 183 | 201 | IPR002067 | GO:0055085(InterPro) | |
| HCH13g0668 | 322 | PRINTS | Mitochondrial carrier protein signature | 39 | 53 | IPR002067 | GO:0055085(InterPro) | |
| HCH13g0668 | 322 | FunFam | Mitochondrial substrate carrier family protein | 27 | 319 | - | - | |
| HCH13g0668 | 322 | Gene3D | Mitochondrial carrier domain | 30 | 322 | IPR023395 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g0478 | HCH-Chr12:2801697 | HCH13g0668 | HCH-Chr13:5330930 | 1.40E-71 | dispersed | |
| HCH13g0668 | HCH-Chr13:5330930 | HCH4g1500 | HCH-Chr4:11418458 | 2.40E-70 | dispersed | |
| HCH2g0996 | HCH-Chr2:53235588 | HCH13g0668 | HCH-Chr13:5330930 | 8.60E-28 | transposed | |
| HCH7g1002 | HCH-Chr7:41001183 | HCH13g0668 | HCH-Chr13:5330930 | 1.40E-86 | transposed | |
| HCH9g0795 | HCH-Chr9:5508358 | HCH13g0668 | HCH-Chr13:5330930 | 1.80E-25 | transposed | |
| HCH13g0668 | HCH-Chr13:5330930 | HCH9g0717 | HCH-Chr9:4777329 | 1.40E-09 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g0668 | K15121 | - | csv:101206140 | 557.755 |