Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0668 ATGGCTGCGGATTCTTCTCGAATTCAAACGTTTGGTCAAACCGAGATTAATTGGGATAAGCTTGATAAAACTAAATTTTATGGCGTAGGAGCTGGTCTCTTTACAGGGGTTACAGTTGCACTGTACCCAGTCTCTGTTATAAAAACAAGGTTGCAGGTTGCTGTAAGGGACTCTGCTGAGAAAAATGCATTGTCTGTTATCAAAGGCATACTGAAAAATGATGGGGTTCCTGGTCTCTACAGAGGGTTTGGTACAGTAATCACTGGTGCTATTCCTGCAAGGATAATCTTCCTTACTGCTTTAGAGACGACCAAAGTGGGAACTTTAAAAATTGTCGAGCCTCTCAAATTTTCTGAACCGGTACAGGCAGCACTAGCAAATGGATTAGCTGGCATGACTGCATCACTTTTTTCTCAAGCTGTTTTTGTTCCAATTGACGTGATTAGTCAAAAGCTGATGGTTCAAGGATACTCAGGCTATGCAAGTTATAATGGAGGTTTAGATGTTGCTCGTAAAGTAATCAAGTCTGATGGAATCCGGGGACTATATAGAGGTTTTGGGTTATCTGTTATGACTTACTCTCCATCTAGTGCTGTATGGTGGGCTAGCTATGGTGCAAGTCAACGTGTCATCTGGAGGTTTTTAGGCCAAAATTCTGCTTCTGAGGAGTCTGCTCCTAGCCAAGCCAAACTTGTGTTAGTTCAAGCTGCTGGCGGTATAATTGCAGGTGCCACAGCTTCCTGCATTACAACACCGTTGGACACCATAAAGACTCGCTTGCAGGTGATGGGGCTTGATAAAAGAAAGACAGCAAGACAAGTTGTTGATCGCTTAATTGCAGAGGAAGGATGGAAAGGTTTTTATAGGGGGCTGGGTCCTCGGTTTTTCAGCATGTCAGCCTGGGGAACCTCAATGATATTGGCTTACGAGTACTTGAAACGCTTGTGTGCAAAAGACGACCAGACGTGA 969 43.76 MAADSSRIQTFGQTEINWDKLDKTKFYGVGAGLFTGVTVALYPVSVIKTRLQVAVRDSAEKNALSVIKGILKNDGVPGLYRGFGTVITGAIPARIIFLTALETTKVGTLKIVEPLKFSEPVQAALANGLAGMTASLFSQAVFVPIDVISQKLMVQGYSGYASYNGGLDVARKVIKSDGIRGLYRGFGLSVMTYSPSSAVWWASYGASQRVIWRFLGQNSASEESAPSQAKLVLVQAAGGIIAGATASCITTPLDTIKTRLQVMGLDKRKTARQVVDRLIAEEGWKGFYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKDDQT 322
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 5330930 5335719 + evm.model.ptg000021l.668 HCH13g0668 557173
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0668 322 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 10 321 - -
HCH13g0668 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 210 IPR018108 -
HCH13g0668 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 19 107 IPR018108 -
HCH13g0668 322 Pfam Mitochondrial carrier protein 233 318 IPR018108 -
HCH13g0668 322 Pfam Mitochondrial carrier protein 31 105 IPR018108 -
HCH13g0668 322 Pfam Mitochondrial carrier protein 124 211 IPR018108 -
HCH13g0668 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 315 IPR018108 -
HCH13g0668 322 SUPERFAMILY Mitochondrial carrier 19 312 IPR023395 -
HCH13g0668 322 PRINTS Mitochondrial carrier protein signature 239 261 IPR002067 GO:0055085(InterPro)
HCH13g0668 322 PRINTS Mitochondrial carrier protein signature 183 201 IPR002067 GO:0055085(InterPro)
HCH13g0668 322 PRINTS Mitochondrial carrier protein signature 39 53 IPR002067 GO:0055085(InterPro)
HCH13g0668 322 FunFam Mitochondrial substrate carrier family protein 27 319 - -
HCH13g0668 322 Gene3D Mitochondrial carrier domain 30 322 IPR023395 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0478 HCH-Chr12:2801697 HCH13g0668 HCH-Chr13:5330930 1.40E-71 dispersed
HCH13g0668 HCH-Chr13:5330930 HCH4g1500 HCH-Chr4:11418458 2.40E-70 dispersed
HCH2g0996 HCH-Chr2:53235588 HCH13g0668 HCH-Chr13:5330930 8.60E-28 transposed
HCH7g1002 HCH-Chr7:41001183 HCH13g0668 HCH-Chr13:5330930 1.40E-86 transposed
HCH9g0795 HCH-Chr9:5508358 HCH13g0668 HCH-Chr13:5330930 1.80E-25 transposed
HCH13g0668 HCH-Chr13:5330930 HCH9g0717 HCH-Chr9:4777329 1.40E-09 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0668 K15121 - csv:101206140 557.755