Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0697 ATGCCATCCAAATTCCCCTTCTTCTCTCCCAGTTGGAGCGAACTGTGTCTAAGACACGCACCTTCCACCAATGAAACGGATAACGCCGCTGTCGCGGTTGATGACAACAATCTCCTCCACGGCGGCGGAGAGTGCTACGCTTGCACTCAAGTAGGCGTTCCGGCGTTTCATTCCACCAGCTGTGACCACGCCCAGCAGCCCGAATGGGAAGCTTCCGCCGGCTCTTCTCTCGTCCCAATTCAACCCAAGAAAAGCTCCACCACCACCGCCACGACAGCGACCCGTCGGGCTCAAACGGGTCGGTTCGGGAGCGTGTTGGACCCGAGGACGAAACGGGTACAGAAATGGAACAGGGCGTTGTTACTGGCACGTGGCATGGCGTTAGCCGTGGATCCTCTGTACTTCTACGCGCTGTCGATCGGAAGAGGGGGGACCCCGTGCCTGTACATGGACGGTGGATTAGCTGCCGTCGTCACCGTTCTCCGCACGTGTGTGGATGTGGTGCATCTGTGGCACGTGTGGCTGCAGTTCAGGTTGGCGTACGTGTCGAGGGAAAGTATGGTGATTGGTTGTGGTAAACTAGTGTGGGACGCACGTGCCATAGCTGCTCATTATGTACGGTCGTTCAAAGGTTTCTGGTTCGATGGTTTTGTTATACTCCCCATTCCACAGATTGTTTTTTGGTTGGTTTTACCAAAACTGATAAGAGAAGAGAGGATCAAGCTTATAATGTCTGTGATCTTATTAATGTTCTTGTTCCAATTCCTACCAAAAGTCTACCACTCCATTATTTTGATGAGAAGAATGCAGAAGGTCACTGGATATATCTTTGGTACTATTTGGTGGGGTTTTGGCCTTAATCTCATTGCCTATTTCATTGCCTCTCATGTTGCCGGGGGATGCTGGTATGTTCTTGCGATTCAGCGAGTAGCTTCTTGCATCCAGCAACATTGTGAGAGAAACAAATGTAATCTATCTTTGGCTTGCTCCGAGGAGGTATGTTATCAGTTTCTCTTACCAACTGGAACAATTGGAAATCCATGTGATCGTAATTCGACCGCAGCATTTAGAAAGCCATTATGCTTAGATGTTAACGGTCCATTCCCTTATGGCATATACAAATGGGCTCTTCCTGTCATATCTAGCAATTCGATCGCGGTCAAAATCCTTTATCCCATATTTTGGGGTTTAATGACTCTCAGCACCTTTGGCAATGATCTTGAGCCCACAAGTCATTGGCTTGAAGTATTCTTCAGTATTTGCCTAGTGCTCAGTGGACTATTGCTTTTCACTCTTTTGATTGGTAATATTCAGGTACTTTTGCACGCTGTCATGGCGAGGAAGCGAAAAATGCAGCTGAGATGTCGAGATTTGGAGTGGTGGATGAGAAGGCGACAATTACCGTCTCGTTTGAGACATCGAGTTCGACATTATGAACACCAAAGATGGGCATCCATGGGGGGTGAAGATGAAATGGAACTGATCAAAGACTTGCCTGAAGGTCTTCGAAGAGACATTAAACGACATCTTTGTGTTGATCTCATAAAACAGGTGCCTCTGTTCCAAAACCTGGATGACCTTATTCTTGACAACATATGTGATCGAGTCAAGCCACTTGTATTCTCCAAAGATGAAAAGATTATTAGAGAAGGAGATCCTGTTCCAAGGATGTTGTTCATAGTTTGTGGATGCATAAAAAGAAGCCAAAGCTTGAGTAAGGGCATGACGGCGACGAGTATGATCGAACCAGGAGGCTTTCTCGGCGACGAATTGCTATCGTGGTGTCTTCGACGCCCGTTTTTAGACAGACTTCCACCTTCATCAGCTACATTTGTTTGCATTGAACCAACAGAAGCATTTGCCCTGAATGCAGACCATCTCAAGTACATAACAGATCATTTCCGCTACAAATTTGCGAACGAGAGACTCAAGAGAACAGCAAGATATTACTCTTCCAACTGGCGAACATGGGCTGCTGTGAACCTACAATTCGCTTGGCGCCGCTACAGAAAGAGGACCAGACGTCCCGTGATTGCTGTGGAGGAAAACGGAACAAGCGAACGCCGCCTTTTGCAGTATGCTGCAATGTTCATGTCATTCAGGCCACATGACCATCTTGAATGA 2124 47.41 MPSKFPFFSPSWSELCLRHAPSTNETDNAAVAVDDNNLLHGGGECYACTQVGVPAFHSTSCDHAQQPEWEASAGSSLVPIQPKKSSTTTATTATRRAQTGRFGSVLDPRTKRVQKWNRALLLARGMALAVDPLYFYALSIGRGGTPCLYMDGGLAAVVTVLRTCVDVVHLWHVWLQFRLAYVSRESMVIGCGKLVWDARAIAAHYVRSFKGFWFDGFVILPIPQIVFWLVLPKLIREERIKLIMSVILLMFLFQFLPKVYHSIILMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCIQQHCERNKCNLSLACSEEVCYQFLLPTGTIGNPCDRNSTAAFRKPLCLDVNGPFPYGIYKWALPVISSNSIAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVFFSICLVLSGLLLFTLLIGNIQVLLHAVMARKRKMQLRCRDLEWWMRRRQLPSRLRHRVRHYEHQRWASMGGEDEMELIKDLPEGLRRDIKRHLCVDLIKQVPLFQNLDDLILDNICDRVKPLVFSKDEKIIREGDPVPRMLFIVCGCIKRSQSLSKGMTATSMIEPGGFLGDELLSWCLRRPFLDRLPPSSATFVCIEPTEAFALNADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNLQFAWRRYRKRTRRPVIAVEENGTSERRLLQYAAMFMSFRPHDHLE 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5689475 5694478 + evm.model.ptg000021l.697 HCH13g0697 557202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0697 707 Gene3D Jelly Rolls 518 636 IPR014710 -
HCH13g0697 707 Pfam Ion transport protein 156 440 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0697 707 Pfam Cyclic nucleotide-binding domain 540 629 IPR000595 -
HCH13g0697 707 ProSiteProfiles cAMP/cGMP binding motif profile. 520 630 IPR000595 -
HCH13g0697 707 SUPERFAMILY cAMP-binding domain-like 447 634 IPR018490 -
HCH13g0697 707 Gene3D Helix hairpin bin 446 511 - -
HCH13g0697 707 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 93 675 - -
HCH13g0697 707 SMART cnmp_10 520 646 IPR000595 -
HCH13g0697 707 SUPERFAMILY Voltage-gated potassium channels 108 441 - -
HCH13g0697 707 MobiDBLite consensus disorder prediction 72 93 - -
HCH13g0697 707 Gene3D - 148 444 - -
HCH13g0697 707 CDD CAP_ED 520 630 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1036 HCH-Chr11:41907522 HCH13g0697 HCH-Chr13:5689475 1.90E-234 dispersed
HCH13g0697 HCH-Chr13:5689475 HCH6g0713 HCH-Chr6:40557755 5.10E-182 dispersed
HCH13g0697 HCH-Chr13:5689475 HCH8g0989 HCH-Chr8:45991506 1.70E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0697 K05391 - csv:101203560 1214.13