Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g0701 | ATGGCAAAAAAGGAAGAGTCTTCTTCTTCTTCTACATCAAGAGCTTCAGTCCAGAGACCAACAATAACTCTACCACCAAGACCTTCCATGGAAGCCTTTTTCAGTAGTGGACCCACAGGAGTTAGCCCTGGTCCCATGACTCTCGTTTCCAGTTTCTTCTCTGATGCTTACGTTGACTCCCCCTCTTTCTCTCAGCTACTCGCCGGAGCCATGGGCTCTCCTATGCCTATCGGTTTATTCGGGCCCGGTTCGACCCCGAATTATTATGCCAAAGATGGAGCCGGAGCTGGAGCTGAAGGTGGGTTGGAAATGGATTTCGGGTTGAAGCCTCTTAATTTGGTTGTTGCTCATCCTCATCCTCGCTCTCCTAATTTGTTTACTCTCCCTTCTGGTTTAAGTCCCTCTGGATTGCTTAATTCCCCTGCCTTTTTCCCTCCTCAGAGCCCATTTGGAATGTCCCACCAGCAGGCATTGGCTCAGGTTACTGCTCAAGCAGCATTAGCCCATTCTCATATGCACATTCAGCAAACTGAATATCAACATTCTTCAGTATCTGCTCCCACAGAACCGTTGACACGCGATCCATCATTTACTCTTGATGAAGCCTCTCAACTTTCAATCTTACCCTCAACATCAGATCCCAAAAATCTCATTTCAGAATCACCAGAGGTCTCTCATTCTGATAGAAAACAACAACCTCCTTCCCATGCCTCTGATAAACCTGCAGATGATGGCTATAACTGGCGGAAATATGGACAGAAGCTTGTTAAGGGGAGTGAATATCCACGAAGCTATTACAAATGTACACATTTGAATTGTCCAGTGAAAAAGAAGATTGAGAGGTCACCTGATGGTCAAATAACTGAGATTATTTACAAAGGCCAGCATAACCATGAACCTCCTCCAGCCAATAAACGTGCAAGAGATGGTAGTGAACCAAATGGGTCAACAAATTCTCAGGCTAAACCTGAACATGGTTCACAAAATCAAGCTGTAATTTTGAACAAGTCAAGTGAAAAAGTGCCATTAGGGACTAGTGACAGTGAAGAACAAGCTGATACCGAGATAACTGATGACAGAGATGATGATGAGCCAAATCCAAAAAGGCAGAACGTTGATGCTGGAACTTCTGGTGTTTCCCTATCACATAAGACACTCACAGAACCAAAAATTATTGTGCAAACACGAAGTGAGGTTGACCTGTTAGATGATGGTTATAGGTGGCGCAAATATGGGCAGAAAGTGGTTAAAGGAAATCCTAATCCTAGGAGCTACTACAAATGCACTTTTGCCGGATGCAATGTTCGTAAGCATGTCGAGAGATCTTCAACAGACTCGAAAGCTGTTGTAACTACATATGAAGGGAAGCATAATCATGATGTTCCTGCAGCTAGAAACAGCAGCCACCATACGGTCAACAATACTGTGCCCCAGATTAAACCACATAAGGTAGTAGCTCAAAAACATCCATTACTTAAAGAGATTGAATTTGGAACTAATGACCAGAGACCTGCAGTTTTAAGGCTTAAAGAAGAGCAAATCACAGTGTAA | 1551 | 43.65 | MAKKEESSSSSTSRASVQRPTITLPPRPSMEAFFSSGPTGVSPGPMTLVSSFFSDAYVDSPSFSQLLAGAMGSPMPIGLFGPGSTPNYYAKDGAGAGAEGGLEMDFGLKPLNLVVAHPHPRSPNLFTLPSGLSPSGLLNSPAFFPPQSPFGMSHQQALAQVTAQAALAHSHMHIQQTEYQHSSVSAPTEPLTRDPSFTLDEASQLSILPSTSDPKNLISESPEVSHSDRKQQPPSHASDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDGSEPNGSTNSQAKPEHGSQNQAVILNKSSEKVPLGTSDSEEQADTEITDDRDDDEPNPKRQNVDAGTSGVSLSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTFAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVPQIKPHKVVAQKHPLLKEIEFGTNDQRPAVLRLKEEQITV | 516 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 5721942 | 5726711 | + | evm.model.ptg000021l.701 | HCH13g0701 | 557206 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g0701 | 516 | FunFam | WRKY transcription factor | 229 | 302 | - | - | |
| HCH13g0701 | 516 | MobiDBLite | consensus disorder prediction | 222 | 247 | - | - | |
| HCH13g0701 | 516 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| HCH13g0701 | 516 | MobiDBLite | consensus disorder prediction | 172 | 247 | - | - | |
| HCH13g0701 | 516 | SUPERFAMILY | WRKY DNA-binding domain | 394 | 462 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH13g0701 | 516 | SMART | WRKY_cls | 242 | 300 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH13g0701 | 516 | SMART | WRKY_cls | 402 | 461 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH13g0701 | 516 | MobiDBLite | consensus disorder prediction | 172 | 221 | - | - | |
| HCH13g0701 | 516 | Gene3D | WRKY domain | 387 | 463 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH13g0701 | 516 | Gene3D | WRKY domain | 230 | 302 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH13g0701 | 516 | MobiDBLite | consensus disorder prediction | 310 | 350 | - | - | |
| HCH13g0701 | 516 | ProSiteProfiles | WRKY domain profile. | 397 | 462 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH13g0701 | 516 | SUPERFAMILY | WRKY DNA-binding domain | 240 | 301 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH13g0701 | 516 | MobiDBLite | consensus disorder prediction | 293 | 382 | - | - | |
| HCH13g0701 | 516 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| HCH13g0701 | 516 | Pfam | WRKY DNA -binding domain | 243 | 299 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH13g0701 | 516 | Pfam | WRKY DNA -binding domain | 403 | 460 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH13g0701 | 516 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 173 | 473 | IPR044810 | GO:0003700(InterPro) | |
| HCH13g0701 | 516 | ProSiteProfiles | WRKY domain profile. | 237 | 301 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH13g0701 | 516 | FunFam | WRKY transcription factor 33 | 389 | 455 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g0701 | HCH-Chr13:5721942 | HCH6g0924 | HCH-Chr6:44014255 | 5.20E-67 | dispersed | |
| HCH6g0856 | HCH-Chr6:43373510 | HCH13g0701 | HCH-Chr13:5721942 | 2.90E-74 | transposed | |
| HCH7g0326 | HCH-Chr7:2339749 | HCH13g0701 | HCH-Chr13:5721942 | 4.00E-60 | transposed | |
| HCH1g0893 | HCH-Chr1:57396564 | HCH13g0701 | HCH-Chr13:5721942 | 3.10E-136 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 32814 | PF03106 | WRKY | 3.00E-25 | CL0274 | HCH | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g0701 | - | - | - | 0.0 |