Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0724 ATGCAGTTGAAAGATGGTCCCAAAATGTTCTATAAGATAGAAATAATGAGAGCTTTATATGGAATCTTGCTGTTGGGATTTTTGTCAATTTTTTCATTTGTTAATGGAGATTATGGAGGTTGGATCAATGCTCATGCGACTTTCTATGGAGGAAGTGATGCATCTGGGACAATGGGTGGGGCTTGTGGTTATGGAAATTTGTACAGCCAAGGCTATGGCACTAATACTGCCGCATTAAGCACTGCATTATTTGATAATGGTTTGAGCTGTGGGGCTTGTTTTGAGCTGAGGTGTGTGAATGATCCACAATGGTGTCTTCCAGGCACCATTGTTGTCACTGCCACTAACTTCTGCCCTCCTGGCGGCTGCTGTGATCCTCCTAACCATCATTTTGATCTCTCTCAGCCTATCTTCCAGCACATTGCCCAATATCGAGCCGGAATCATCCCCGTAGCTTACCGGAGGGTGAGGTGCAGAAGAAGTGGGGGCGTAAGATTCACCATCAATGGCCATTCTTACTTCAACTTGGTGCTAGTTACAAACGTAGGTGGCGCGGGCGACATCCATTCGGTAGCGATCAAGGGCTCGAGAACCCGGTGGCAGCCGATGTCAAGGAATTGGGGCCAAAACTGGCAAAGCAACGCTTACCTCAATGGACAAAGCCTCTCTTTTCTAGTCACAGCCAGTGATGGTCGTCAGGTGGTTTCATACAATGTTGCTCCTGCCGGTTGGTCTTTTGGACAGACTTATACTGGCGGCCAATTTCGCTATTAA 774 47.03 MQLKDGPKMFYKIEIMRALYGILLLGFLSIFSFVNGDYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCLPGTIVVTATNFCPPGGCCDPPNHHFDLSQPIFQHIAQYRAGIIPVAYRRVRCRRSGGVRFTINGHSYFNLVLVTNVGGAGDIHSVAIKGSRTRWQPMSRNWGQNWQSNAYLNGQSLSFLVTASDGRQVVSYNVAPAGWSFGQTYTGGQFRY 257
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 6105552 6107204 + evm.model.ptg000021l.724 HCH13g0724 557229
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0724 257 PRINTS Expansin signature 98 109 IPR002963 GO:0009664(InterPro)
HCH13g0724 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
HCH13g0724 257 PRINTS Expansin signature 71 85 IPR002963 GO:0009664(InterPro)
HCH13g0724 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
HCH13g0724 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
HCH13g0724 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
HCH13g0724 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
HCH13g0724 257 PRINTS Expansin signature 110 120 IPR002963 GO:0009664(InterPro)
HCH13g0724 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
HCH13g0724 257 FunFam Expansin 32 159 - -
HCH13g0724 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
HCH13g0724 257 PANTHER EXPANSIN-A15 31 255 IPR002963 GO:0009664(InterPro)
HCH13g0724 257 Pfam Lytic transglycolase 76 153 IPR009009 -
HCH13g0724 257 FunFam Expansin 163 255 - -
HCH13g0724 257 CDD DPBB_EXPA_N 40 158 - -
HCH13g0724 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 163 IPR007112 -
HCH13g0724 257 Gene3D - 163 255 IPR036749 -
HCH13g0724 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
HCH13g0724 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
HCH13g0724 257 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576(InterPro)
HCH13g0724 257 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576(InterPro)
HCH13g0724 257 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576(InterPro)
HCH13g0724 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
HCH13g0724 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
HCH13g0724 257 SUPERFAMILY Barwin-like endoglucanases 40 181 IPR036908 -
HCH13g0724 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
HCH13g0724 257 Gene3D - 30 159 IPR036908 -
HCH13g0724 257 SMART dpbb_1 76 153 IPR007112 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0724 HCH-Chr13:6105552 HCH1g0288 HCH-Chr1:45418363 4.20E-102 dispersed
HCH1g0914 HCH-Chr1:57522355 HCH13g0724 HCH-Chr13:6105552 6.70E-105 wgd
HCH13g0724 HCH-Chr13:6105552 HCH3g0070 HCH-Chr3:402889 6.10E-93 wgd
HCH13g0724 HCH-Chr13:6105552 HCH4g0896 HCH-Chr4:5762602 2.40E-113 wgd
HCH13g0724 HCH-Chr13:6105552 HCH8g1292 HCH-Chr8:48034614 1.60E-109 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0724 K20628 - csv:101220358 478.789