Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g0724 | ATGCAGTTGAAAGATGGTCCCAAAATGTTCTATAAGATAGAAATAATGAGAGCTTTATATGGAATCTTGCTGTTGGGATTTTTGTCAATTTTTTCATTTGTTAATGGAGATTATGGAGGTTGGATCAATGCTCATGCGACTTTCTATGGAGGAAGTGATGCATCTGGGACAATGGGTGGGGCTTGTGGTTATGGAAATTTGTACAGCCAAGGCTATGGCACTAATACTGCCGCATTAAGCACTGCATTATTTGATAATGGTTTGAGCTGTGGGGCTTGTTTTGAGCTGAGGTGTGTGAATGATCCACAATGGTGTCTTCCAGGCACCATTGTTGTCACTGCCACTAACTTCTGCCCTCCTGGCGGCTGCTGTGATCCTCCTAACCATCATTTTGATCTCTCTCAGCCTATCTTCCAGCACATTGCCCAATATCGAGCCGGAATCATCCCCGTAGCTTACCGGAGGGTGAGGTGCAGAAGAAGTGGGGGCGTAAGATTCACCATCAATGGCCATTCTTACTTCAACTTGGTGCTAGTTACAAACGTAGGTGGCGCGGGCGACATCCATTCGGTAGCGATCAAGGGCTCGAGAACCCGGTGGCAGCCGATGTCAAGGAATTGGGGCCAAAACTGGCAAAGCAACGCTTACCTCAATGGACAAAGCCTCTCTTTTCTAGTCACAGCCAGTGATGGTCGTCAGGTGGTTTCATACAATGTTGCTCCTGCCGGTTGGTCTTTTGGACAGACTTATACTGGCGGCCAATTTCGCTATTAA | 774 | 47.03 | MQLKDGPKMFYKIEIMRALYGILLLGFLSIFSFVNGDYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCLPGTIVVTATNFCPPGGCCDPPNHHFDLSQPIFQHIAQYRAGIIPVAYRRVRCRRSGGVRFTINGHSYFNLVLVTNVGGAGDIHSVAIKGSRTRWQPMSRNWGQNWQSNAYLNGQSLSFLVTASDGRQVVSYNVAPAGWSFGQTYTGGQFRY | 257 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 6105552 | 6107204 | + | evm.model.ptg000021l.724 | HCH13g0724 | 557229 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g0724 | 257 | PRINTS | Expansin signature | 98 | 109 | IPR002963 | GO:0009664(InterPro) | |
HCH13g0724 | 257 | PRINTS | Expansin signature | 238 | 254 | IPR002963 | GO:0009664(InterPro) | |
HCH13g0724 | 257 | PRINTS | Expansin signature | 71 | 85 | IPR002963 | GO:0009664(InterPro) | |
HCH13g0724 | 257 | PRINTS | Expansin signature | 138 | 151 | IPR002963 | GO:0009664(InterPro) | |
HCH13g0724 | 257 | PRINTS | Expansin signature | 174 | 195 | IPR002963 | GO:0009664(InterPro) | |
HCH13g0724 | 257 | PRINTS | Expansin signature | 121 | 138 | IPR002963 | GO:0009664(InterPro) | |
HCH13g0724 | 257 | PRINTS | Expansin signature | 162 | 174 | IPR002963 | GO:0009664(InterPro) | |
HCH13g0724 | 257 | PRINTS | Expansin signature | 110 | 120 | IPR002963 | GO:0009664(InterPro) | |
HCH13g0724 | 257 | PRINTS | Expansin signature | 209 | 230 | IPR002963 | GO:0009664(InterPro) | |
HCH13g0724 | 257 | FunFam | Expansin | 32 | 159 | - | - | |
HCH13g0724 | 257 | Pfam | Expansin C-terminal domain | 164 | 241 | IPR007117 | - | |
HCH13g0724 | 257 | PANTHER | EXPANSIN-A15 | 31 | 255 | IPR002963 | GO:0009664(InterPro) | |
HCH13g0724 | 257 | Pfam | Lytic transglycolase | 76 | 153 | IPR009009 | - | |
HCH13g0724 | 257 | FunFam | Expansin | 163 | 255 | - | - | |
HCH13g0724 | 257 | CDD | DPBB_EXPA_N | 40 | 158 | - | - | |
HCH13g0724 | 257 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 59 | 163 | IPR007112 | - | |
HCH13g0724 | 257 | Gene3D | - | 163 | 255 | IPR036749 | - | |
HCH13g0724 | 257 | PRINTS | Expansin/Lol pI family signature | 238 | 252 | IPR007118 | GO:0005576(InterPro) | |
HCH13g0724 | 257 | PRINTS | Expansin/Lol pI family signature | 146 | 162 | IPR007118 | GO:0005576(InterPro) | |
HCH13g0724 | 257 | PRINTS | Expansin/Lol pI family signature | 58 | 76 | IPR007118 | GO:0005576(InterPro) | |
HCH13g0724 | 257 | PRINTS | Expansin/Lol pI family signature | 40 | 55 | IPR007118 | GO:0005576(InterPro) | |
HCH13g0724 | 257 | PRINTS | Expansin/Lol pI family signature | 80 | 98 | IPR007118 | GO:0005576(InterPro) | |
HCH13g0724 | 257 | PRINTS | Expansin/Lol pI family signature | 200 | 214 | IPR007118 | GO:0005576(InterPro) | |
HCH13g0724 | 257 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 173 | 252 | IPR007117 | - | |
HCH13g0724 | 257 | SUPERFAMILY | Barwin-like endoglucanases | 40 | 181 | IPR036908 | - | |
HCH13g0724 | 257 | SUPERFAMILY | PHL pollen allergen | 160 | 252 | IPR036749 | - | |
HCH13g0724 | 257 | Gene3D | - | 30 | 159 | IPR036908 | - | |
HCH13g0724 | 257 | SMART | dpbb_1 | 76 | 153 | IPR007112 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0724 | HCH-Chr13:6105552 | HCH1g0288 | HCH-Chr1:45418363 | 4.20E-102 | dispersed | |
HCH1g0914 | HCH-Chr1:57522355 | HCH13g0724 | HCH-Chr13:6105552 | 6.70E-105 | wgd | |
HCH13g0724 | HCH-Chr13:6105552 | HCH3g0070 | HCH-Chr3:402889 | 6.10E-93 | wgd | |
HCH13g0724 | HCH-Chr13:6105552 | HCH4g0896 | HCH-Chr4:5762602 | 2.40E-113 | wgd | |
HCH13g0724 | HCH-Chr13:6105552 | HCH8g1292 | HCH-Chr8:48034614 | 1.60E-109 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g0724 | K20628 | - | csv:101220358 | 478.789 |