Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0736 ATGGATTTAGCCCCAGCTATTACCACAAGTAGTAACACTAAATCGCCGGAAGCCGACAGCGATACACCGTCGAGAATTCTGCCGTCCGCCGGGAAGTCAGCGCCGTTCAGCAACGGCGTCCTCAAACGCCATCAATCCAACTCCCATCACAACCAACGCCATATCACCGCCGCCGCCGTCTCCCAACCGGTGGCCGTCACTTACCGGGAATGTCTCAAAAACCACGCCGCCAGCTTAGGAGCTCACGCTCTAGACGGCTGTGGAGAGTTCATGCCCTCTCCTTCCGCTACCTCCACAGACCCCACCTCGCTAAAATGCGCCGCTTGCGGATGCCACCGTAACTTCCACCGCCGTGAACCCGAAGAGCCTATCTCCACCCTCGCCCTCTCCACCGCCGCCGCTACTCATGTCATCGAATATCAACCCCACCACCGCCACCATCCACCTCCTCCGCCGCTCCCCGGGACACGCAGCCCGAATTCATCATCTCCGCCGCCAATCTCTTCCTCTTATTACCCATCAGCACCCCACATGCTATTAGCACTATCCACCGGTGGATTATCAGTTCATCCGCCGGAAACCGCGACCGGAGGTCCGATGAGCGCCGTTTTAGCTCCGAGCCCGAATGCCCGGAAAAGATTTAGAACGAAATTCAGCCATGATCAGAAAGAGAAGATGCTCGAATTCGCTGAGAGACTAGGATGGAAAATGCAGAAAAGAGATGAAGATTTAGTCCAAGAATTTTGCAACCAAGTTGGAGTTGAAAGAGGGGTTCTTAAAGTATGGATGCATAATAACAAAAACACCATGGGAAAGAAGGTAGACTCGAATGGAAACGGCATCGGCATCGGTATCGGAATCGACATCGACATCGCCTCCCCTGTCGCCCCCGTGGAAAACGGAGAAAACAAAATTTCCGGGAATGAAATGAACAAGAACGGTAGCGGCGGCGGATTACATATTCATCATCATCATGACGGCTCAAATGGGTCATCGTCTTCTTCTTGA 1008 53.47 MDLAPAITTSSNTKSPEADSDTPSRILPSAGKSAPFSNGVLKRHQSNSHHNQRHITAAAVSQPVAVTYRECLKNHAASLGAHALDGCGEFMPSPSATSTDPTSLKCAACGCHRNFHRREPEEPISTLALSTAAATHVIEYQPHHRHHPPPPPLPGTRSPNSSSPPPISSSYYPSAPHMLLALSTGGLSVHPPETATGGPMSAVLAPSPNARKRFRTKFSHDQKEKMLEFAERLGWKMQKRDEDLVQEFCNQVGVERGVLKVWMHNNKNTMGKKVDSNGNGIGIGIGIDIDIASPVAPVENGENKISGNEMNKNGSGGGLHIHHHHDGSNGSSSSS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6263603 6264610 + evm.model.ptg000021l.736 HCH13g0736 557241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0736 335 Gene3D - 204 272 - -
HCH13g0736 335 Pfam ZF-HD protein dimerisation region 66 120 IPR006456 -
HCH13g0736 335 MobiDBLite consensus disorder prediction 141 170 - -
HCH13g0736 335 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 269 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
HCH13g0736 335 SUPERFAMILY Homeodomain-like 205 272 IPR009057 -
HCH13g0736 335 NCBIfam homeobox domain, ZF-HD class 211 268 IPR006455 -
HCH13g0736 335 FunFam Zinc-finger homeodomain protein 2 200 272 - -
HCH13g0736 335 MobiDBLite consensus disorder prediction 39 54 - -
HCH13g0736 335 MobiDBLite consensus disorder prediction 1 54 - -
HCH13g0736 335 MobiDBLite consensus disorder prediction 1 22 - -
HCH13g0736 335 MobiDBLite consensus disorder prediction 147 161 - -
HCH13g0736 335 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 119 IPR006456 -
HCH13g0736 335 MobiDBLite consensus disorder prediction 300 335 - -
HCH13g0736 335 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 67 119 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0736 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0736 HCH-Chr13:6263603 HCH14g0573 HCH-Chr14:34602936 1.10E-38 dispersed
HCH13g0736 HCH-Chr13:6263603 HCH13g0738 HCH-Chr13:6329951 1.60E-13 proximal
HCH1g0927 HCH-Chr1:57583440 HCH13g0736 HCH-Chr13:6263603 3.00E-45 wgd
HCH13g0736 HCH-Chr13:6263603 HCH3g0060 HCH-Chr3:352747 2.50E-14 wgd
HCH13g0736 HCH-Chr13:6263603 HCH4g0887 HCH-Chr4:5688741 1.00E-39 wgd
HCH13g0736 HCH-Chr13:6263603 HCH8g1303 HCH-Chr8:48074972 4.80E-13 wgd
HCH13g0736 HCH-Chr13:6263603 HCH9g0225 HCH-Chr9:1329224 8.00E-77 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0459 . 45 235 ZF-HD Transcription Factor Family AT5G65410 51.5 4.2e-47 185.3
HCH4g0254 . 5 230 ZF-HD Transcription Factor Family AT4G24660 54.2 7.5e-58 220.7
HCH4g0729 . 85 289 ZF-HD Transcription Factor Family AT4G24660 50.7 7.8e-47 184.1
HCH13g0736 . 3 267 ZF-HD Transcription Factor Family AT5G15210 52.5 1.2e-49 193.7
HCH9g0225 . 7 260 ZF-HD Transcription Factor Family AT5G15210 52.8 1.6e-46 183.3
HCH9g0225 . 1 263 ZF-HD Transcription Factor Family AT3G28920 66.3 3.2e-64 242.3
HCH13g0736 . 14 269 ZF-HD Transcription Factor Family AT3G28920 57.0 1.6e-55 213.4
HCH9g0225 . 22 270 ZF-HD Transcription Factor Family AT5G39760 63.2 7.3e-54 208.0
HCH13g0736 . 22 273 ZF-HD Transcription Factor Family AT5G39760 54.2 1.6e-48 190.3
HCH4g0254 . 5 230 ZF-HD Transcription Factor Family AT4G24660 54.2 7.5e-58 220.7
HCH4g0729 . 85 289 ZF-HD Transcription Factor Family AT4G24660 50.7 7.8e-47 184.1
HCH9g0225 . 22 270 ZF-HD Transcription Factor Family AT5G39760 63.2 7.3e-54 208.0
HCH13g0736 . 22 273 ZF-HD Transcription Factor Family AT5G39760 54.2 1.6e-48 190.3
HCH14g0459 . 45 235 ZF-HD Transcription Factor Family AT5G65410 51.5 4.2e-47 185.3
HCH13g0736 . 3 267 ZF-HD Transcription Factor Family AT5G15210 52.5 1.2e-49 193.7
HCH9g0225 . 7 260 ZF-HD Transcription Factor Family AT5G15210 52.8 1.6e-46 183.3
HCH9g0225 . 1 263 ZF-HD Transcription Factor Family AT3G28920 66.3 3.2e-64 242.3
HCH13g0736 . 14 269 ZF-HD Transcription Factor Family AT3G28920 57.0 1.6e-55 213.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32818 PF04770 ZF-HD_dimer 6.60E-29 No_clan HCH TF