Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0736 ATGGATTTAGCCCCAGCTATTACCACAAGTAGTAACACTAAATCGCCGGAAGCCGACAGCGATACACCGTCGAGAATTCTGCCGTCCGCCGGGAAGTCAGCGCCGTTCAGCAACGGCGTCCTCAAACGCCATCAATCCAACTCCCATCACAACCAACGCCATATCACCGCCGCCGCCGTCTCCCAACCGGTGGCCGTCACTTACCGGGAATGTCTCAAAAACCACGCCGCCAGCTTAGGAGCTCACGCTCTAGACGGCTGTGGAGAGTTCATGCCCTCTCCTTCCGCTACCTCCACAGACCCCACCTCGCTAAAATGCGCCGCTTGCGGATGCCACCGTAACTTCCACCGCCGTGAACCCGAAGAGCCTATCTCCACCCTCGCCCTCTCCACCGCCGCCGCTACTCATGTCATCGAATATCAACCCCACCACCGCCACCATCCACCTCCTCCGCCGCTCCCCGGGACACGCAGCCCGAATTCATCATCTCCGCCGCCAATCTCTTCCTCTTATTACCCATCAGCACCCCACATGCTATTAGCACTATCCACCGGTGGATTATCAGTTCATCCGCCGGAAACCGCGACCGGAGGTCCGATGAGCGCCGTTTTAGCTCCGAGCCCGAATGCCCGGAAAAGATTTAGAACGAAATTCAGCCATGATCAGAAAGAGAAGATGCTCGAATTCGCTGAGAGACTAGGATGGAAAATGCAGAAAAGAGATGAAGATTTAGTCCAAGAATTTTGCAACCAAGTTGGAGTTGAAAGAGGGGTTCTTAAAGTATGGATGCATAATAACAAAAACACCATGGGAAAGAAGGTAGACTCGAATGGAAACGGCATCGGCATCGGTATCGGAATCGACATCGACATCGCCTCCCCTGTCGCCCCCGTGGAAAACGGAGAAAACAAAATTTCCGGGAATGAAATGAACAAGAACGGTAGCGGCGGCGGATTACATATTCATCATCATCATGACGGCTCAAATGGGTCATCGTCTTCTTCTTGA 1008 53.47 MDLAPAITTSSNTKSPEADSDTPSRILPSAGKSAPFSNGVLKRHQSNSHHNQRHITAAAVSQPVAVTYRECLKNHAASLGAHALDGCGEFMPSPSATSTDPTSLKCAACGCHRNFHRREPEEPISTLALSTAAATHVIEYQPHHRHHPPPPPLPGTRSPNSSSPPPISSSYYPSAPHMLLALSTGGLSVHPPETATGGPMSAVLAPSPNARKRFRTKFSHDQKEKMLEFAERLGWKMQKRDEDLVQEFCNQVGVERGVLKVWMHNNKNTMGKKVDSNGNGIGIGIGIDIDIASPVAPVENGENKISGNEMNKNGSGGGLHIHHHHDGSNGSSSSS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6263603 6264610 + evm.model.ptg000021l.736 HCH13g0736 557241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0736 335 Gene3D - 204 272 - -
HCH13g0736 335 Pfam ZF-HD protein dimerisation region 66 120 IPR006456 -
HCH13g0736 335 MobiDBLite consensus disorder prediction 141 170 - -
HCH13g0736 335 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 269 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
HCH13g0736 335 SUPERFAMILY Homeodomain-like 205 272 IPR009057 -
HCH13g0736 335 NCBIfam homeobox domain, ZF-HD class 211 268 IPR006455 -
HCH13g0736 335 FunFam Zinc-finger homeodomain protein 2 200 272 - -
HCH13g0736 335 MobiDBLite consensus disorder prediction 39 54 - -
HCH13g0736 335 MobiDBLite consensus disorder prediction 1 54 - -
HCH13g0736 335 MobiDBLite consensus disorder prediction 1 22 - -
HCH13g0736 335 MobiDBLite consensus disorder prediction 147 161 - -
HCH13g0736 335 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 119 IPR006456 -
HCH13g0736 335 MobiDBLite consensus disorder prediction 300 335 - -
HCH13g0736 335 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 67 119 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0736 HCH-Chr13:6263603 HCH14g0573 HCH-Chr14:34602936 1.10E-38 dispersed
HCH13g0736 HCH-Chr13:6263603 HCH13g0738 HCH-Chr13:6329951 1.60E-13 proximal
HCH1g0927 HCH-Chr1:57583440 HCH13g0736 HCH-Chr13:6263603 3.00E-45 wgd
HCH13g0736 HCH-Chr13:6263603 HCH3g0060 HCH-Chr3:352747 2.50E-14 wgd
HCH13g0736 HCH-Chr13:6263603 HCH4g0887 HCH-Chr4:5688741 1.00E-39 wgd
HCH13g0736 HCH-Chr13:6263603 HCH8g1303 HCH-Chr8:48074972 4.80E-13 wgd
HCH13g0736 HCH-Chr13:6263603 HCH9g0225 HCH-Chr9:1329224 8.00E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32818 PF04770 ZF-HD_dimer 6.60E-29 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0736 - - - 0.0