Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g0745 | ATGGCTGAAGCAGTACAAGAGCCTAAAGGATTACCTCAGCCAGAAAAGAAGAAGGAACAAAGCCTACCCTTTTACCAACTCTTTTCATTTGCTGATAAATATGATTGTTTTCTTATGATCCTTGGAACTTTAGGTGCCATTGTGCATGGCTCTTCCACTCCTGTTTTCTTCCTTCTTTTTGGTGAAATGATTAATGGTTTTGGTAAAAACCAAGATGATTTTCAGAAAATGATTCATGAAGTTTGTAAGTATGCTCTCTATTTTGTTTATGTGGCTCTCATTGTCTGCTTCTCATCCTATGCCGAGATAGCATGCTGGATGTACTCAGGGGAGAGGCAAGTTTGCACATTGAGAAAGAAGTATTTAGAAGCAGTTTTGAAACAAGATGTTGGATTCTTTGACACTGATGCTAGGACTGGGGATGTTGTTTTCAGTGTCTCTACTGATACTCTTCTTGTTCAAGATGCAATTAGTGAGAAGGTGGGAAATTTCATTCATTATCTATCAACATTTCTGGCTGGATTGGTGGTGGGATTTGTGTCAGCATGGAAGCTAGCGCTTCTGAGTGTGGCAGTAATTCCAGGAATTGCTTTTGCTGGAGGCTTATATGCATATACTCTCACTGGGCTCACTTCCAAGAGTAGAGAATCCTATGCCAATGCTGGTATCATTGCTGAACAGGCTGTTGCTCAAGTTCGGACTGTTTACTCGTATGTTGGTGAGAGCAAAGCCCTCAATTCCTACTCAGATGCCATTCAAAATACCTTGAAACTTGGATACAAGGCAGGGATGGCCAAAGGTTTGGGTCTAGGATGTACCTATGGAATAGCTTGCATGTCGTGGGCTCTTGTTTTCTGGTATGCTGGTGTTTTTATCAGGAACGGACAGACCGATGCTGGCAAGGCGTTTACTGCTATATTCTCTGCTATTGTTGGTGGCATGAGTTTGGGTCAGTCATTCTCGAACTTGGGTGCATTTAGCAAAGGCAAAGCAGCTGGATACAAGTTGATGGAGATAATGAAGCAGAAGCCTTCTATCATTCATGACCCCTTGGATGGGAAGTGTTTGGCTGAGGTTAATGGGAATATAGAGTTGAAAAATGTGACCTTCAGCTATCCATCAAGGCCTGATGTGATCATTTTCCGCGATTTCTCAATTTTCTTTCCAGCTGGGAAGACGGTTGCGGTTGTTGGTGGTAGTGGTTCAGGGAAAAGCACGGTTGTTTCTCTGATAGAACGATTCTACGACCCTAATCAGGGGCAAGTTCTGCTGGATAATGTGGACATAAAGACACTGCAATTGAAATGGTTGCGTGATCAGATTGGATTAGTGAACCAGGAGCCGGCACTCTTTGCAACAACAATACTAGAGAACATTCTTTACGGGAAGCCTGATGCAACCACGGCAGAAGTGGAAGCTGCTACTGCTGCTGCAAATGCTCATAGCTTCATTACATTGCTCCCCAATGGTTACAACACACAGGTTGGAGAGCGAGGTTTACAACTCTCTGGTGGCCAAAAGCAGAGGATTGCAATTGCTAGAGCTATGTTGAAAGATCCCAAGATCCTCCTCCTTGATGAAGCAACTAGTGCCCTTGATGCCGGGTCTGAGAGCATTGTTCAGGAAGCTCTAGACCGTCTGATGGTTGGAAGAACAACGGTGGTTGTTGCACATCGCTTATCGACTATAAGAAATGTCGATTCTATTGCAGTGATACAGCAAGGGCAGGTTGTTGAGACTGGAACTCATGAAGAATTGATTGCCAAAGCTGGTGCCTATTCTTCATTGATTCGATTCCAAGAAATGGTTAGAAACAGGGAGTTCTCCAACCCATCAACCCGTCGAACACGCTCTTCGCGACTAAGTCATTCATTATCAACAAAGTCGTTAAGCCTCCGCTCTGGCAGCCTAAGGAACCTGAGCTATTCATATAGCACCGGTGCTGATGGCAGGATTGAAATGGTCTCAAATGCGGAGACTGACCGCAAAAATCCTGCCCCAGATGGCTATTTTCTCCGCCTTCTTAAGCTCAACGGTCCTGAATGGCCATATTCGATCATGGGCGCTGTTGGTTCTATACTTTCGGGTTTCATCGGTCCAACCTTTGCCATTGTGATGAGTAACATGATCGATGTTTTCTACTATAGAAACTCAGCTGCAATGGAAAGGAAGATAAAGGAGTTTGTTTTCATCTACATTGGAGTTGGCCTCTACGCCGTGGTTGCTTATCTAATCCAGCATTACTTCTTTACCATCATGGGAGAGAACCTCACTACTAGAGTGAGAAGAATGATGCTAGCAGCAATCTTGAGGAATGAAGTCGGATGGTTCGATGAGGAAGAACACAACTCGAGTTTGGTAGTGGCTCGTTTGGCCACGGATGCAGCCGATGTTAAATCCGCGATTGCTGAGAGGATCTCAGTGATTTTGCAAAACATGACTTCACTCTTCACTTCTTTCATAGTTGCCTTCATTGTGGAATGGAGAGTCTCTCTTCTCATCCTTGCAGTTTTCCCACTTCTAGTCCTTGCCAACATGGCTCAGCAACTTTCTCTCAAAGGATTTGCTGGGGATACGGCTAAGGCCCACGCAAAGACAAGTATGATTGCAGGAGAAGGAGTGAGCAATATCCGAACAGTAGCTGCCTTCAATGCTCAAGACAAGATCCTCTCACTATTCTGTCATCAACTTCGTGTCCCACAGCTTCAAAGCCTTCGTCGTAGCCAAACTGCTGGCATGCTCTTCGGCTTATCGCAGTTTGCACTATATGCATCAGAAGCTCTTGTTTTGTGGTATGGTGTCCATCTTGTGAGCAGGGGCGGCTCGACATTCTCTAAAGTGATTAAAGTTTTCGTGGTTTTGGTTGTCACGGCTAATTCGGTGGCGGAAACCGTTAGTCTTGCTCCGGAGATCATTCGTGGTGGCGAATCGATTGGTTCGGTCTTCTCTATTCTCGATCGTTCAACGAGGATAGATCCTGATGATCCTGAAGCAGAGCCAGTTGAGACACTTCGTGGGGAGATTGAACTTAGACATGTTGATTTTGCATACCCTTCACGACCTGATGTCATGGTCTTCAAGGATTTCAATCTTCGAATCCGAGCTGGTCAAAGCCAAGCACTTGTCGGGGCAAGTGGATCGGGAAAGAGTTCTGTCATTGCCTTGATAGAGAGATTCTATGATCCAATTGCTGGGAAAGTTATGGTTGATGGAAAGGACATCAGGCGGCTCAACTTACAGTCTTTGAGGCTTAAAATCGGGCTGGTGCAGCAAGAGCCAGCCCTCTTTGCTGCCAGCATCTTTGACAACATTGCATATGGAAAAGATGGTGCAACTGAAGCTGAAGTAATAGAAGCAGCCCGAGCAGCTAACGTGCATGCCTTTGTCAGCGGGCTGCCTGATGGCTACAAGACTCCCGTTGGTGAGAGAGGGGTTCAGTTGTCTGGTGGCCAAAAACAACGGATTGCGATTGCGAGGGCCGTTCTAAAGGACCCCACAATTCTCCTATTGGATGAGGCAACAAGTGCCCTTGATGCCGAGTCAGAGTGTGTGCTGCAAGAAGCCTTAGAGAGGCTGATGAGGGGCCGAACCACCGTGCTGGTGGCCCATCGGTTGTCGACAATCAGAGGGGTAGACTGCATTGGAGTCGTGCAAGATGGTCGCATTGTGGAGCAAGGGAGTCATAGTGAGCTACTAAGCCGACCCGAGGGGGCTTATTCAAGGCTTTTGCAGCTGCAGCACCAACACATATGA | 3753 | 46.07 | MAEAVQEPKGLPQPEKKKEQSLPFYQLFSFADKYDCFLMILGTLGAIVHGSSTPVFFLLFGEMINGFGKNQDDFQKMIHEVCKYALYFVYVALIVCFSSYAEIACWMYSGERQVCTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAVAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDAGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIMKQKPSIIHDPLDGKCLAEVNGNIELKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATTAEVEAATAAANAHSFITLLPNGYNTQVGERGLQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELIAKAGAYSSLIRFQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNGPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIDVFYYRNSAAMERKIKEFVFIYIGVGLYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVVARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAVFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFCHQLRVPQLQSLRRSQTAGMLFGLSQFALYASEALVLWYGVHLVSRGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESIGSVFSILDRSTRIDPDDPEAEPVETLRGEIELRHVDFAYPSRPDVMVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHAFVSGLPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELLSRPEGAYSRLLQLQHQHI | 1250 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 6458438 | 6465697 | + | evm.model.ptg000021l.745 | HCH13g0745 | 557250 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g0745 | 1250 | FunFam | ABC transporter B family member 1 | 665 | 974 | - | - | |
| HCH13g0745 | 1250 | ProSitePatterns | ABC transporters family signature. | 1147 | 1161 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH13g0745 | 1250 | ProSitePatterns | ABC transporters family signature. | 502 | 516 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH13g0745 | 1250 | Gene3D | ABC transporter type 1, transmembrane domain | 975 | 1248 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| HCH13g0745 | 1250 | SUPERFAMILY | ABC transporter transmembrane region | 27 | 349 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| HCH13g0745 | 1250 | Pfam | ABC transporter transmembrane region | 39 | 312 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| HCH13g0745 | 1250 | Pfam | ABC transporter transmembrane region | 686 | 956 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| HCH13g0745 | 1250 | CDD | ABC_MTABC3_MDL1_MDL2 | 363 | 600 | - | - | |
| HCH13g0745 | 1250 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 998 | 1246 | IPR027417 | - | |
| HCH13g0745 | 1250 | FunFam | ABC transporter B family member 19 | 353 | 601 | - | - | |
| HCH13g0745 | 1250 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 675 | 991 | - | - | |
| HCH13g0745 | 1250 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 363 | 599 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH13g0745 | 1250 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 39 | 336 | - | - | |
| HCH13g0745 | 1250 | Gene3D | ABC transporter type 1, transmembrane domain | 26 | 615 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| HCH13g0745 | 1250 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 40 | 328 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| HCH13g0745 | 1250 | FunFam | ABC transporter B family member 1 | 26 | 361 | - | - | |
| HCH13g0745 | 1250 | Gene3D | ABC transporter type 1, transmembrane domain | 665 | 974 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| HCH13g0745 | 1250 | Gene3D | - | 998 | 1247 | IPR027417 | - | |
| HCH13g0745 | 1250 | Gene3D | - | 353 | 601 | IPR027417 | - | |
| HCH13g0745 | 1250 | PANTHER | ABC TRANSPORTER B FAMILY | 11 | 621 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| HCH13g0745 | 1250 | SUPERFAMILY | ABC transporter transmembrane region | 673 | 987 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| HCH13g0745 | 1250 | CDD | ABC_MTABC3_MDL1_MDL2 | 1008 | 1246 | - | - | |
| HCH13g0745 | 1250 | SMART | AAA_5 | 390 | 582 | IPR003593 | GO:0016887(InterPro) | |
| HCH13g0745 | 1250 | SMART | AAA_5 | 1035 | 1221 | IPR003593 | GO:0016887(InterPro) | |
| HCH13g0745 | 1250 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 356 | 600 | IPR027417 | - | |
| HCH13g0745 | 1250 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 686 | 973 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| HCH13g0745 | 1250 | Pfam | ABC transporter | 383 | 530 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH13g0745 | 1250 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1010 | 1244 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH13g0745 | 1250 | FunFam | ABC transporter B family member 19 | 998 | 1247 | - | - | |
| HCH13g0745 | 1250 | Pfam | ABC transporter | 1027 | 1175 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g0448 | HCH-Chr13:3106705 | HCH13g0745 | HCH-Chr13:6458438 | 2.70E-272 | dispersed | |
| HCH13g0745 | HCH-Chr13:6458438 | HCH2g0332 | HCH-Chr2:43703631 | 6.10E-255 | dispersed | |
| HCH11g0296 | HCH-Chr11:2688423 | HCH13g0745 | HCH-Chr13:6458438 | 0.00E+00 | transposed | |
| HCH12g0109 | HCH-Chr12:582523 | HCH13g0745 | HCH-Chr13:6458438 | 0.00E+00 | transposed | |
| HCH12g1156 | HCH-Chr12:9665668 | HCH13g0745 | HCH-Chr13:6458438 | 1.20E-277 | transposed | |
| HCH13g0779 | HCH-Chr13:7280675 | HCH13g0745 | HCH-Chr13:6458438 | 5.80E-306 | transposed | |
| HCH14g1034 | HCH-Chr14:37497059 | HCH13g0745 | HCH-Chr13:6458438 | 2.50E-304 | transposed | |
| HCH1g1099 | HCH-Chr1:58654639 | HCH13g0745 | HCH-Chr13:6458438 | 3.40E-282 | transposed | |
| HCH1g1196 | HCH-Chr1:59146100 | HCH13g0745 | HCH-Chr13:6458438 | 9.30E-299 | transposed | |
| HCH3g0126 | HCH-Chr3:798942 | HCH13g0745 | HCH-Chr13:6458438 | 2.30E-93 | transposed | |
| HCH4g1534 | HCH-Chr4:11813624 | HCH13g0745 | HCH-Chr13:6458438 | 4.90E-280 | transposed | |
| HCH7g1489 | HCH-Chr7:47497100 | HCH13g0745 | HCH-Chr13:6458438 | 2.10E-48 | transposed | |
| HCH8g0705 | HCH-Chr8:43767619 | HCH13g0745 | HCH-Chr13:6458438 | 5.20E-275 | transposed | |
| HCH13g0745 | HCH-Chr13:6458438 | HCH5g0253 | HCH-Chr5:1495504 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g0745 | K05658 | - | csv:101212585 | 2204.1 |