Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0750 ATGGCTTCTCCACATTCTCATAGTTTCATGTTCCAACCACGAGTAGGAGATCATCAAGAATACGTCCCTTCAACTTCTTTCAACAACATCCCAGCTTCCTGCCCTCCTCAACTCTACTTTCGTGATGGGGTTCCTTTCATGATGAAGAGATCGATGTCATTTTCAGGAGTAGAAAACGCGTGTGAAGAAATGAATGGAGAGGAGGGATTGTCAGATGATGGATCAGCACTTGGAGAGAAGAAGAAGAGGTTGAATTTAGAGCAAGTTAAGGCCTTGGAAAAGAGCTTTGAATTGGGAAACAAGCTTGAGCCTGAGAGGAAAATACAACTGGCTAAAGCATTGGGTTTACAACCCAGACAGATAGCCATTTGGTTCCAAAACAGAAGGGCCAGGTGGAAGACCAAACAACTTGAGAGAGACTATGATGTTTTGAAGAAACAGTTTGAATCACTTAAGGCTGATAATGATGCTCTTCAAGCTCAAAACACCAAACTTCATTCAGAGTTATTGGCAATAAAAAGTAAAGACTCCGGCGATGCAGCTCCCGGCCCGGGCGTCACGGCGAGCCTAAAGAAAGAAAACGAAGGTTGTTGGAGCAATAATGGGAGTGAAAACAGTTGTGATATAAACTTGGACATCTCAAGGACACAAGTAATAAGCAGCAGCAACAACAACAATAACAGCCGCAGTCCAGTTTCTTCCCAGTTAGGCATTAAAGACCTTTTTCCATCAGCTTTCAGATCCTCATCCTCATCCACAGCCATAACTCAGCTCCTTCAAACTTCATCAAGACCAGATCTTCATCATCATCATCAAAATCATCAGGCTGTGATTCAAGATGAAGGCTTCTCTCAAATGTTCAATGGCATTGATGAACAACAAGCTGCAGCAGCAGCAGCAGCAGCAGGGTTTTGGCCATGGAATACTGATCAAAACAGCCATTTTCATTGA 951 43.22 MASPHSHSFMFQPRVGDHQEYVPSTSFNNIPASCPPQLYFRDGVPFMMKRSMSFSGVENACEEMNGEEGLSDDGSALGEKKKRLNLEQVKALEKSFELGNKLEPERKIQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDVLKKQFESLKADNDALQAQNTKLHSELLAIKSKDSGDAAPGPGVTASLKKENEGCWSNNGSENSCDINLDISRTQVISSSNNNNNSRSPVSSQLGIKDLFPSAFRSSSSSTAITQLLQTSSRPDLHHHHQNHQAVIQDEGFSQMFNGIDEQQAAAAAAAAGFWPWNTDQNSHFH 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6633281 6634864 + evm.model.ptg000021l.750 HCH13g0750 557255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0750 316 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH13g0750 316 PRINTS Lambda-repressor HTH signature 106 115 IPR000047 GO:0003677(InterPro)
HCH13g0750 316 PRINTS Lambda-repressor HTH signature 115 131 IPR000047 GO:0003677(InterPro)
HCH13g0750 316 SUPERFAMILY Homeodomain-like 74 137 IPR009057 -
HCH13g0750 316 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 57 269 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
HCH13g0750 316 FunFam Homeobox-leucine zipper protein ATHB-13 72 139 - -
HCH13g0750 316 SMART HOX_1 78 139 IPR001356 GO:0003677(InterPro)
HCH13g0750 316 CDD homeodomain 80 136 IPR001356 GO:0003677(InterPro)
HCH13g0750 316 Gene3D - 73 141 - -
HCH13g0750 316 Pfam Homeobox associated leucine zipper 135 175 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g0750 316 Coils Coil 127 168 - -
HCH13g0750 316 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677(InterPro)
HCH13g0750 316 Pfam Homeodomain 80 133 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0750 HCH-Chr13:6633281 HCH14g0466 HCH-Chr14:33718979 7.10E-27 dispersed
HCH1g0942 HCH-Chr1:57685743 HCH13g0750 HCH-Chr13:6633281 4.80E-52 wgd
HCH13g0750 HCH-Chr13:6633281 HCH3g0280 HCH-Chr3:1777841 1.60E-26 wgd
HCH13g0750 HCH-Chr13:6633281 HCH5g0248 HCH-Chr5:1460797 6.30E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32823 PF00046 Homeodomain 3.20E-15 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0750 K09338 - csv:101212093 414.846