Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0758 ATGGGTTTGGCTCCAAATGACTCAAAGGTGGAATCTTGGGTTGAGGGAAAGTCAAAAATTGGTAAAGATAAGAAGAAAAACAAGAAGGAAGATGGATTAGAAGAAGAAACTGGATGCTGGGTTAGGTTGAGTTTTATAAGGAGTTGCATTCCTTCAAGATCAAAGGTTGATACTTCTTTAAGTGGATCCAAGGTTGATAGCTTCATCAGTGGCACTAGTACCCATTATGATAGTAAATCTAAAGTCGATGAGAGAAGAGATACTTTGGTTGCCGCATTGGAGTCCTCAGCAACTACTAGTAATGCTGAAAGTACTTCATCCACACCCAAGCTTAGTGCCGAGCTGAAGGTTGCTTCTCAGCTTCGTAAGTTCACTTTTAACGATCTTAAGCTAGCAACAAGAAATTTCAGACCTGAGAGCCTTCTTGGTGAGGGAGGTTTCGGTTGCGTTTTCAAAGGATGGATTGAAGAGAATGGAACTGCTCCTGCTAAACCTGGAACTGGGCTTACCGTTGCAGTCAAGACTCTTAATCACGATGGTCTTCAAGGTCATAAAGAGTGGCTGGCTGAGGTTAACTTCCTTGGTGACCTCATCCATCCTAATCTGGTTAAGTTGATTGGTTGCTGCATTGAAGATGATCAAAGGTTGTTAGTTTATGAGTTCATGCCTCGTGGGAGTCTGGAAAACCACCTCTTCAGAAGGCCCTTGCCTCTTCCGTGGTCTATAAGAATGAAAATTGCGCTTGGTGCTGCTAAAGGCCTTGCTTTTCTACATGAAGAAGCTCAAAGACCAGTGATATATCGTGATTTTAAAACATCGAATATTCTATTAGATGCGGATTACAATGCTAAACTCTCAGACTTTGGACTTGCAAAAGATGGTCCTGAGGGTGATAAAACTCATGTCTCAACTCGGGTTATGGGTACCTATGGTTATGCCGCTCCAGAATATGTGATGACTGGGCATTTGACATCAAAAAGTGATGTATACAGTTTTGGAGTCGTCTTGCTTGAAATGCTAACTGGCCGAAGATCAATGGATAAAAACAGACCCAATGGGGAGCATAACCTTGTTGAATGGGCTAGACCACTACTTGGAGACAAGAGGAAGTTCTACCGGCTAATAGATCCTCGCCTTGAATGTCACTTCTCAATAAAAGGTGCTCAAAAAGCTGCGGCGCTAGCAGCCCACTGCCTTAGTCGAGATCCTAAAGCCAGACCTGTGATGAGTGAAGTTGTTGAAACTTTAAAACCTTTGCCAAACCTCAAGGATATGGCCAGTTCTTCCTATTATTTTCAGACCTTGCAAGCAGACCGCGCCAGGTCCAACCCAGGCGCTAAAACTGTCGTCCGCACACAGTCGATGTTCGTTGCTAGAAACGGGCAACACATTAGAAGCTTATCAAGTCCAAATGGTCCTCATGCTTCTCCACACAATCATCCTCGTCAATCGCCTAAACCCGACAGGAGATAA 1473 43.72 MGLAPNDSKVESWVEGKSKIGKDKKKNKKEDGLEEETGCWVRLSFIRSCIPSRSKVDTSLSGSKVDSFISGTSTHYDSKSKVDERRDTLVAALESSATTSNAESTSSTPKLSAELKVASQLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPAKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLIHPNLVKLIGCCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHEEAQRPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPLLGDKRKFYRLIDPRLECHFSIKGAQKAAALAAHCLSRDPKARPVMSEVVETLKPLPNLKDMASSSYYFQTLQADRARSNPGAKTVVRTQSMFVARNGQHIRSLSSPNGPHASPHNHPRQSPKPDRR 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6799006 6803688 - evm.model.ptg000021l.758 HCH13g0758 557263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0758 490 PANTHER OS01G0588500 PROTEIN-RELATED 106 420 IPR050823 -
HCH13g0758 490 MobiDBLite consensus disorder prediction 464 478 - -
HCH13g0758 490 Pfam Protein tyrosine and serine/threonine kinase 140 416 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0758 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0758 490 MobiDBLite consensus disorder prediction 12 36 - -
HCH13g0758 490 FunFam Probable serine/threonine-protein kinase PBL8 222 436 - -
HCH13g0758 490 CDD STKc_IRAK 142 419 - -
HCH13g0758 490 MobiDBLite consensus disorder prediction 464 490 - -
HCH13g0758 490 Gene3D Phosphorylase Kinase; domain 1 111 221 - -
HCH13g0758 490 Gene3D Transferase(Phosphotransferase) domain 1 222 437 - -
HCH13g0758 490 ProSitePatterns Protein kinases ATP-binding region signature. 142 174 IPR017441 GO:0005524(InterPro)
HCH13g0758 490 ProSiteProfiles Protein kinase domain profile. 136 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0758 490 MobiDBLite consensus disorder prediction 1 36 - -
HCH13g0758 490 SUPERFAMILY Protein kinase-like (PK-like) 112 416 IPR011009 -
HCH13g0758 490 FunFam Serine/threonine-protein kinase BIK1 103 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0758 HCH-Chr13:6799006 HCH3g1365 HCH-Chr3:51393000 7.20E-127 dispersed
HCH8g0857 HCH-Chr8:45028191 HCH13g0758 HCH-Chr13:6799006 4.20E-139 transposed
HCH1g0954 HCH-Chr1:57764722 HCH13g0758 HCH-Chr13:6799006 3.40E-201 wgd
HCH13g0758 HCH-Chr13:6799006 HCH4g0851 HCH-Chr4:5442881 8.30E-107 wgd
HCH13g0758 HCH-Chr13:6799006 HCH7g1627 HCH-Chr7:48466000 1.20E-44 wgd
HCH13g0758 HCH-Chr13:6799006 HCH9g0201 HCH-Chr9:1180602 5.20E-226 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81183 PF07714 PK_Tyr_Ser-Thr 9.20E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0758 - - - 0.0