Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0763 ATGGGAGATAATAATAATAATAGTAATAATGATGAAGCTTTGGAAGCTGTTGTGAAAGAAGCCGTGGATTTGGAAAACGTGCCCATCGAAGAGGTTTTTCAGACTTTGAGGTGTAATACAAATGGTCTTACTACAGAGGCAGCTCATGAGAGGCTGGCTATATTTGGATACAACAAGCTTGAAGAAAAAAAGGAGAGTAAGATTTTGAAGTTCTTGGGATTTATGTGGAATCCTCTCTCATGGGTCATGGAAGCTGCAGCTATAATGGCTATTGCTCTAGCCAATGGAGGAGGAAAGCCGCCTGATTGGCAAGATTTTGTTGGGATCATAACCTTGTTGCTTATTAATTCAACAATAAGTTTTATAGAAGAGAACAATGCCGGGAATGCTGCTGCTGCTCTCATGGCTCATCTCGCCCCAAAAGCTAAGGTCCTCAGAGATGGGAAGTGGATAGAGGAGGAGGCATCAGTTCTTGTTCCTGGTGATATAATCAGCGTTAAGCTTGGTGATATCATTCCTGCTGATTCTCGTCTTCTTGACGGTGATCCCTTGAAAATCGATCAATCCGCTCTCACAGGCGAGTCACTTCCTGTGACTAAAGGTCCAGGTGATAGTGTCTATTCAGGTTCTACATGCAAACAGGGAGAAATTGAAGCAGTTGTTATTGCAACTGGTGTTCATACCTTTTTTGGAAAAGCTGCTCATCTCGTGGACTCCACAAACCAAGTGGGTCACTTCCAAAAGGTCTTGACTGCTATTGGAAATTTCTGTATATGTTCCATTGCTGTGGGCATGATAGTAGAGATCATTGTCATGTACCCAATTCAACATCGGGCATACCGTCCAGGGATTGATAATCTCTTGGTTCTTCTCATCGGAGGAATTCCTATTGCAATGCCAACAGTTCTATCAGTCACAATGGCAATTGGATCGCATCGTCTATCTCAGCAGGGAGCTATCACTAAACGAATGACTGCAATTGAAGAAATGGCTGGAATGGATGTGCTTTGTAGTGACAAAACGGGAACACTGACATTAAATAAACTTACTGTTGACAAGAATCTAATTGAGGTTTTTGCCAAGGGAGTGGACGCAGATACTGTTGTTCTCATGGCAGCTCGAGCCTCCCGAATTGAAAATCAAGATGCTATAGATGCTGCTATTGTAGGGATGTTGAGTGATCCCAAGGAGGCACGAGAAGGCATTCAAGAGGTTCACTTCCTTCCATTCAATCCAACGGACAAGCGAACTGCCCTGACGTACATTGACAGTGATGGTAAAATGCATCGTGTCAGCAAAGGTGCTCCAGAGCAGATTTTGCATCTTGCACACAATAAATCAGAGATAGATAGAAGAGTTCATGCTGTAATCGATAAGTATGCAGAGCGAGGATTGCGATCACTTGCAGTGGCATACCAAGAAGTTCCTGAAGGAAGGAAGGAGAGTCCGGGAGGGCCATGGCAATTCATTGGCCTAATGCCTCTCTTTGACCCACCTAGACACGATAGTGCCGAGACAATTCGGCGGGCTTTGAATCTTGGTGTAAATGTTAAAATGATCACAGGTGATCAACTAGCTATAGGAAAGGAAACAGGTCGTCGACTAGGAATGGGAACGAATATGTATCCTTCATCGGCACTATTAGGACAAAATAAAGAGGAATCAATTGCTGGGTTGCCTGTTGATGAATTAATTGAAAAGGCCGATGGATTTGCTGGTGTATTCCCTGAGCACAAATATGAGATTGTTAAACGTTTACAAGCTCGGAAGCATATATGCGGAATGACTGGAGATGGTGTAAATGATGCTCCAGCTCTTAAAAGGGCTGATATTGGCATAGCGGTTGCAGATGCAACTGATGCCGCTCGCGGTGCTTCTGACATTGTTCTTACAGAGCCTGGTCTTAGTGTTATTATCAGTGCTGTTCTAACCAGCCGAGCCATCTTTCAGAGGATGAAAAATTATACGATTTATGCAGTTTCGATTACAATTCGTATCGTGCTTGGATTCATGTTACTGGCTCTTATATATCAATTTGACTTCCCGCCTTTTATGGTTCTGATAATCGCTATCCTTAACGATGGTACCATAATGACAATATCAAAGGATAGAGTGAAACCATCTCCTTTGCCAGATAGCTGGAAGTTGGCAGAGATCTTTGGCACTGGAATTATACTTGGTGGTTATTTAGCGATGATGACTGTTATTTTCTTTTGGGCAGCTTACAAAACCGACTTCTTTCCTCGTACATTTGGGGTTTCCAGCCTTCAGATGAAGGATGAGGATGATTTTAGGAAGCTTGCCTCAGCTATATACCTGCAAGTGAGTACAATCAGTCAGGCCCTTATTTTTGTGACACGATCTCGGAATTGGTCATTTGTGGAGCGTCCTGGCCTGTTATTGGTTACAGCTTTTGTTATTGCTCAGCTGATTGCTACACTGATTGCTGTCTATGCAAACTGGAGTTTTGCTGCAATAGAAGGGATTGGCTGGGGCTGGGCTGGTGTGGTTTGGCTTTACAACCTCATCTTTTATTTCCCACTTGATATTATCAAGTTCATAATCAGATATGCCCTTAGTGGTAGGGCCTGGGACCTTGTCATTGAACAAAGGATTGCCTTCACAAGGAAGAAGGATTTCGGGAAGGAAGAGCGTGAGCTGAAATGGGCACATGCACAAAGGACACTTCATGGGCTGCAGCCACCTGAGGCTAAGATGTTCACTGAGCGCACAACTTACACAGAGCTTAATCAAATGGCAGAAGAAGCAAAAAGACGAGCTGAAATCGCCAGGCTGAGAGAGCTGCACACATTGAAAGGTCATGTTGAATCAGTGGTGAGGCTTAAGGGTCTTGATATCAACACCATTCAGCAATCATACACAGTATAG 2889 43.54 MGDNNNNSNNDEALEAVVKEAVDLENVPIEEVFQTLRCNTNGLTTEAAHERLAIFGYNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMAHLAPKAKVLRDGKWIEEEASVLVPGDIISVKLGDIIPADSRLLDGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIVEIIVMYPIQHRAYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDADTVVLMAARASRIENQDAIDAAIVGMLSDPKEAREGIQEVHFLPFNPTDKRTALTYIDSDGKMHRVSKGAPEQILHLAHNKSEIDRRVHAVIDKYAERGLRSLAVAYQEVPEGRKESPGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKEESIAGLPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIYQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFGTGIILGGYLAMMTVIFFWAAYKTDFFPRTFGVSSLQMKDEDDFRKLASAIYLQVSTISQALIFVTRSRNWSFVERPGLLLVTAFVIAQLIATLIAVYANWSFAAIEGIGWGWAGVVWLYNLIFYFPLDIIKFIIRYALSGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLQPPEAKMFTERTTYTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDINTIQQSYTV 962
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 6838516 6844647 - evm.model.ptg000021l.763 HCH13g0763 557268
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0763 962 PRINTS P-type cation-transporting ATPase superfamily signature 513 523 - -
HCH13g0763 962 PRINTS P-type cation-transporting ATPase superfamily signature 187 201 - -
HCH13g0763 962 PRINTS P-type cation-transporting ATPase superfamily signature 491 502 - -
HCH13g0763 962 PRINTS P-type cation-transporting ATPase superfamily signature 596 615 - -
HCH13g0763 962 PRINTS P-type cation-transporting ATPase superfamily signature 337 351 - -
HCH13g0763 962 PRINTS P-type cation-transporting ATPase superfamily signature 619 631 - -
HCH13g0763 962 Gene3D - 102 827 - -
HCH13g0763 962 FunFam Plasma membrane ATPase 349 496 - -
HCH13g0763 962 NCBIfam plasma-membrane proton-efflux P-type ATPase 42 818 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
HCH13g0763 962 Coils Coil 913 933 - -
HCH13g0763 962 ProSitePatterns E1-E2 ATPases phosphorylation site. 339 345 IPR018303 -
HCH13g0763 962 PANTHER CALCIUM-TRANSPORTING ATPASE 25 894 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
HCH13g0763 962 FunFam Plasma membrane ATPase 140 224 - -
HCH13g0763 962 SFLD p-type atpase 319 647 IPR044492 -
HCH13g0763 962 SUPERFAMILY HAD-like 333 643 IPR036412 -
HCH13g0763 962 FunFam ATPase 4 plasma membrane-type 582 827 - -
HCH13g0763 962 NCBIfam HAD-IC family P-type ATPase 109 357 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH13g0763 962 NCBIfam HAD-IC family P-type ATPase 571 679 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH13g0763 962 FunFam Plasma membrane ATPase 490 644 - -
HCH13g0763 962 Gene3D - 140 224 - -
HCH13g0763 962 PRINTS H+-transporting ATPase (proton pump) signature 596 612 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH13g0763 962 PRINTS H+-transporting ATPase (proton pump) signature 772 793 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH13g0763 962 PRINTS H+-transporting ATPase (proton pump) signature 627 652 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH13g0763 962 PRINTS H+-transporting ATPase (proton pump) signature 453 471 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH13g0763 962 PRINTS H+-transporting ATPase (proton pump) signature 568 584 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH13g0763 962 SFLD C1.7: P-type atpase like 319 647 - -
HCH13g0763 962 CDD P-type_ATPase_H 42 853 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
HCH13g0763 962 Gene3D - 911 962 - -
HCH13g0763 962 Pfam haloacid dehalogenase-like hydrolase 333 610 - -
HCH13g0763 962 Pfam Cation transporter/ATPase, N-terminus 26 89 IPR004014 -
HCH13g0763 962 Gene3D - 349 496 IPR023299 GO:0000166(InterPro)
HCH13g0763 962 SUPERFAMILY Calcium ATPase, transmembrane domain M 23 859 IPR023298 -
HCH13g0763 962 Pfam E1-E2 ATPase 138 316 - -
HCH13g0763 962 SUPERFAMILY Calcium ATPase, transduction domain A 140 237 IPR008250 -
HCH13g0763 962 SMART Cation_ATPase_N_a_2 23 95 IPR004014 -
HCH13g0763 962 Gene3D - 334 633 IPR023214 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0763 HCH-Chr13:6838516 HCH4g0377 HCH-Chr4:2468768 0.00E+00 dispersed
HCH13g0763 HCH-Chr13:6838516 HCH3g0287 HCH-Chr3:1812395 0.00E+00 wgd
HCH13g0763 HCH-Chr13:6838516 HCH8g1326 HCH-Chr8:48216710 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0763 K01535 - csv:101211115 1751.1