Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g0763 | ATGGGAGATAATAATAATAATAGTAATAATGATGAAGCTTTGGAAGCTGTTGTGAAAGAAGCCGTGGATTTGGAAAACGTGCCCATCGAAGAGGTTTTTCAGACTTTGAGGTGTAATACAAATGGTCTTACTACAGAGGCAGCTCATGAGAGGCTGGCTATATTTGGATACAACAAGCTTGAAGAAAAAAAGGAGAGTAAGATTTTGAAGTTCTTGGGATTTATGTGGAATCCTCTCTCATGGGTCATGGAAGCTGCAGCTATAATGGCTATTGCTCTAGCCAATGGAGGAGGAAAGCCGCCTGATTGGCAAGATTTTGTTGGGATCATAACCTTGTTGCTTATTAATTCAACAATAAGTTTTATAGAAGAGAACAATGCCGGGAATGCTGCTGCTGCTCTCATGGCTCATCTCGCCCCAAAAGCTAAGGTCCTCAGAGATGGGAAGTGGATAGAGGAGGAGGCATCAGTTCTTGTTCCTGGTGATATAATCAGCGTTAAGCTTGGTGATATCATTCCTGCTGATTCTCGTCTTCTTGACGGTGATCCCTTGAAAATCGATCAATCCGCTCTCACAGGCGAGTCACTTCCTGTGACTAAAGGTCCAGGTGATAGTGTCTATTCAGGTTCTACATGCAAACAGGGAGAAATTGAAGCAGTTGTTATTGCAACTGGTGTTCATACCTTTTTTGGAAAAGCTGCTCATCTCGTGGACTCCACAAACCAAGTGGGTCACTTCCAAAAGGTCTTGACTGCTATTGGAAATTTCTGTATATGTTCCATTGCTGTGGGCATGATAGTAGAGATCATTGTCATGTACCCAATTCAACATCGGGCATACCGTCCAGGGATTGATAATCTCTTGGTTCTTCTCATCGGAGGAATTCCTATTGCAATGCCAACAGTTCTATCAGTCACAATGGCAATTGGATCGCATCGTCTATCTCAGCAGGGAGCTATCACTAAACGAATGACTGCAATTGAAGAAATGGCTGGAATGGATGTGCTTTGTAGTGACAAAACGGGAACACTGACATTAAATAAACTTACTGTTGACAAGAATCTAATTGAGGTTTTTGCCAAGGGAGTGGACGCAGATACTGTTGTTCTCATGGCAGCTCGAGCCTCCCGAATTGAAAATCAAGATGCTATAGATGCTGCTATTGTAGGGATGTTGAGTGATCCCAAGGAGGCACGAGAAGGCATTCAAGAGGTTCACTTCCTTCCATTCAATCCAACGGACAAGCGAACTGCCCTGACGTACATTGACAGTGATGGTAAAATGCATCGTGTCAGCAAAGGTGCTCCAGAGCAGATTTTGCATCTTGCACACAATAAATCAGAGATAGATAGAAGAGTTCATGCTGTAATCGATAAGTATGCAGAGCGAGGATTGCGATCACTTGCAGTGGCATACCAAGAAGTTCCTGAAGGAAGGAAGGAGAGTCCGGGAGGGCCATGGCAATTCATTGGCCTAATGCCTCTCTTTGACCCACCTAGACACGATAGTGCCGAGACAATTCGGCGGGCTTTGAATCTTGGTGTAAATGTTAAAATGATCACAGGTGATCAACTAGCTATAGGAAAGGAAACAGGTCGTCGACTAGGAATGGGAACGAATATGTATCCTTCATCGGCACTATTAGGACAAAATAAAGAGGAATCAATTGCTGGGTTGCCTGTTGATGAATTAATTGAAAAGGCCGATGGATTTGCTGGTGTATTCCCTGAGCACAAATATGAGATTGTTAAACGTTTACAAGCTCGGAAGCATATATGCGGAATGACTGGAGATGGTGTAAATGATGCTCCAGCTCTTAAAAGGGCTGATATTGGCATAGCGGTTGCAGATGCAACTGATGCCGCTCGCGGTGCTTCTGACATTGTTCTTACAGAGCCTGGTCTTAGTGTTATTATCAGTGCTGTTCTAACCAGCCGAGCCATCTTTCAGAGGATGAAAAATTATACGATTTATGCAGTTTCGATTACAATTCGTATCGTGCTTGGATTCATGTTACTGGCTCTTATATATCAATTTGACTTCCCGCCTTTTATGGTTCTGATAATCGCTATCCTTAACGATGGTACCATAATGACAATATCAAAGGATAGAGTGAAACCATCTCCTTTGCCAGATAGCTGGAAGTTGGCAGAGATCTTTGGCACTGGAATTATACTTGGTGGTTATTTAGCGATGATGACTGTTATTTTCTTTTGGGCAGCTTACAAAACCGACTTCTTTCCTCGTACATTTGGGGTTTCCAGCCTTCAGATGAAGGATGAGGATGATTTTAGGAAGCTTGCCTCAGCTATATACCTGCAAGTGAGTACAATCAGTCAGGCCCTTATTTTTGTGACACGATCTCGGAATTGGTCATTTGTGGAGCGTCCTGGCCTGTTATTGGTTACAGCTTTTGTTATTGCTCAGCTGATTGCTACACTGATTGCTGTCTATGCAAACTGGAGTTTTGCTGCAATAGAAGGGATTGGCTGGGGCTGGGCTGGTGTGGTTTGGCTTTACAACCTCATCTTTTATTTCCCACTTGATATTATCAAGTTCATAATCAGATATGCCCTTAGTGGTAGGGCCTGGGACCTTGTCATTGAACAAAGGATTGCCTTCACAAGGAAGAAGGATTTCGGGAAGGAAGAGCGTGAGCTGAAATGGGCACATGCACAAAGGACACTTCATGGGCTGCAGCCACCTGAGGCTAAGATGTTCACTGAGCGCACAACTTACACAGAGCTTAATCAAATGGCAGAAGAAGCAAAAAGACGAGCTGAAATCGCCAGGCTGAGAGAGCTGCACACATTGAAAGGTCATGTTGAATCAGTGGTGAGGCTTAAGGGTCTTGATATCAACACCATTCAGCAATCATACACAGTATAG | 2889 | 43.54 | MGDNNNNSNNDEALEAVVKEAVDLENVPIEEVFQTLRCNTNGLTTEAAHERLAIFGYNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMAHLAPKAKVLRDGKWIEEEASVLVPGDIISVKLGDIIPADSRLLDGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIVEIIVMYPIQHRAYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDADTVVLMAARASRIENQDAIDAAIVGMLSDPKEAREGIQEVHFLPFNPTDKRTALTYIDSDGKMHRVSKGAPEQILHLAHNKSEIDRRVHAVIDKYAERGLRSLAVAYQEVPEGRKESPGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKEESIAGLPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIYQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFGTGIILGGYLAMMTVIFFWAAYKTDFFPRTFGVSSLQMKDEDDFRKLASAIYLQVSTISQALIFVTRSRNWSFVERPGLLLVTAFVIAQLIATLIAVYANWSFAAIEGIGWGWAGVVWLYNLIFYFPLDIIKFIIRYALSGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLQPPEAKMFTERTTYTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDINTIQQSYTV | 962 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 6838516 | 6844647 | - | evm.model.ptg000021l.763 | HCH13g0763 | 557268 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g0763 | 962 | PRINTS | P-type cation-transporting ATPase superfamily signature | 513 | 523 | - | - | |
| HCH13g0763 | 962 | PRINTS | P-type cation-transporting ATPase superfamily signature | 187 | 201 | - | - | |
| HCH13g0763 | 962 | PRINTS | P-type cation-transporting ATPase superfamily signature | 491 | 502 | - | - | |
| HCH13g0763 | 962 | PRINTS | P-type cation-transporting ATPase superfamily signature | 596 | 615 | - | - | |
| HCH13g0763 | 962 | PRINTS | P-type cation-transporting ATPase superfamily signature | 337 | 351 | - | - | |
| HCH13g0763 | 962 | PRINTS | P-type cation-transporting ATPase superfamily signature | 619 | 631 | - | - | |
| HCH13g0763 | 962 | Gene3D | - | 102 | 827 | - | - | |
| HCH13g0763 | 962 | FunFam | Plasma membrane ATPase | 349 | 496 | - | - | |
| HCH13g0763 | 962 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 42 | 818 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| HCH13g0763 | 962 | Coils | Coil | 913 | 933 | - | - | |
| HCH13g0763 | 962 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 339 | 345 | IPR018303 | - | |
| HCH13g0763 | 962 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 25 | 894 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| HCH13g0763 | 962 | FunFam | Plasma membrane ATPase | 140 | 224 | - | - | |
| HCH13g0763 | 962 | SFLD | p-type atpase | 319 | 647 | IPR044492 | - | |
| HCH13g0763 | 962 | SUPERFAMILY | HAD-like | 333 | 643 | IPR036412 | - | |
| HCH13g0763 | 962 | FunFam | ATPase 4 plasma membrane-type | 582 | 827 | - | - | |
| HCH13g0763 | 962 | NCBIfam | HAD-IC family P-type ATPase | 109 | 357 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH13g0763 | 962 | NCBIfam | HAD-IC family P-type ATPase | 571 | 679 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH13g0763 | 962 | FunFam | Plasma membrane ATPase | 490 | 644 | - | - | |
| HCH13g0763 | 962 | Gene3D | - | 140 | 224 | - | - | |
| HCH13g0763 | 962 | PRINTS | H+-transporting ATPase (proton pump) signature | 596 | 612 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH13g0763 | 962 | PRINTS | H+-transporting ATPase (proton pump) signature | 772 | 793 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH13g0763 | 962 | PRINTS | H+-transporting ATPase (proton pump) signature | 627 | 652 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH13g0763 | 962 | PRINTS | H+-transporting ATPase (proton pump) signature | 453 | 471 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH13g0763 | 962 | PRINTS | H+-transporting ATPase (proton pump) signature | 568 | 584 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH13g0763 | 962 | SFLD | C1.7: P-type atpase like | 319 | 647 | - | - | |
| HCH13g0763 | 962 | CDD | P-type_ATPase_H | 42 | 853 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| HCH13g0763 | 962 | Gene3D | - | 911 | 962 | - | - | |
| HCH13g0763 | 962 | Pfam | haloacid dehalogenase-like hydrolase | 333 | 610 | - | - | |
| HCH13g0763 | 962 | Pfam | Cation transporter/ATPase, N-terminus | 26 | 89 | IPR004014 | - | |
| HCH13g0763 | 962 | Gene3D | - | 349 | 496 | IPR023299 | GO:0000166(InterPro) | |
| HCH13g0763 | 962 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 23 | 859 | IPR023298 | - | |
| HCH13g0763 | 962 | Pfam | E1-E2 ATPase | 138 | 316 | - | - | |
| HCH13g0763 | 962 | SUPERFAMILY | Calcium ATPase, transduction domain A | 140 | 237 | IPR008250 | - | |
| HCH13g0763 | 962 | SMART | Cation_ATPase_N_a_2 | 23 | 95 | IPR004014 | - | |
| HCH13g0763 | 962 | Gene3D | - | 334 | 633 | IPR023214 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g0763 | HCH-Chr13:6838516 | HCH4g0377 | HCH-Chr4:2468768 | 0.00E+00 | dispersed | |
| HCH13g0763 | HCH-Chr13:6838516 | HCH3g0287 | HCH-Chr3:1812395 | 0.00E+00 | wgd | |
| HCH13g0763 | HCH-Chr13:6838516 | HCH8g1326 | HCH-Chr8:48216710 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g0763 | K01535 | - | csv:101211115 | 1751.1 |