Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0776 ATGAAAATATCTTTCTCCTTCTCCTTCCTCTCGTATATATCTCTCTGTCTTCTATTATTTGCTTCTGTTTCTTCTAGGGCAGCTCAAGAAGACGATGTAAGATGCCTTAAAGGGCTTAAAAATTCTCTAATCGATCCTTCTAGAAGATTAAGTTCATGGGATTTCACGAACACGTCTGTCGGAAGCCTGTGTAAGTTTGTGGGATTATCATGTTGGAATGATAGGGAAAATCGAATTTTGAATATTGAGCTTCGAGATATGAACTTGTCTGGTGCCATTTCTCCTGATGTGCAGTACTGTGCTAGCCTACAGAAGCTGGATCTCTCCGGTAACGAGTTTTCGGGTTCGATCCCGCAGCATATTTGTAAGTGGCTGCCCTATTTGGTTGGATTGGATTTGTCATTTAATAAATTTTCAGGTTCTATACCTTCTGATCTTGCTGATTGTTCTTATTTGAATTCCTTGATTCTGTCTGATAATGCGCTTTCGGGTACTATACCGGTCCAATTCGTTAATTTGGGTAGGCTTAGTAAGTTTTCTGTTGCTAATAATCAACTTACTGGTTCCATTCCACCGTTTTTTAATAAATTTGGGAGGGAGGGTTTTGAGGGGAATAGTGATCTTTGTGGGGGGCCTAGTGGATCGAGTTGTGGTGGATTGAGTAAGAAGAATCTCGCGATTATTATAGCGGCTGGTGTGTTTGGTGCTGCGGCTTCGTTGTTGTTGGGTTTTGGATTGTGGTGGTGGTATCATTCGAGGATGAGTTTGGAGAAGAAGAAGAGGGGATATGGGGGTGGTGATGGTGATGGGAATTGGGCTGATAGATTGAGGGCTTATAAGCTTTTTCAAGTTTCGTTGTTTCAGAAGCCGCTTGTGAAAGTTAAATTGGCGGATTTGATGGCTGCTACTAACAATTTCAGTTCTGAGAATATAATTGTTTCGACTAGAACTGGGACTACGTATAAAGCTGTTCTTCGGGATGGTTCTGTGCTTGCTATAAAGCGGCTCAATACTTGTAAGCTTGGTGAGAAGATGTTCCGGACGGAGATGAATCGGTTGGGATTGATAAGGCACCCTAATTTGACACCTCTTTTGGGGTTCTGTGTTGTGGAAGAGGAAAAGCTTTTGGTTTACAAGCATATGTCTAATGGTACTTTGTCATCTTTGTTGCATGGAAATGGTGGTGTTTTAGACTGGCCAACGAGGTTTAGGATTGCTTTGGGTGCAGCAAGGGGTCTTGCTTGGCTTCACCATGGATGCCAACCTCCATTCATGCACCAAAACATATGTTCCAGTGTAATTCTCGTAGATGAAGACTATGATGCAAGGATCATGGACTTTGGGTTGGCAAGGTTAATGTCTACGGATTCTAATGACAGTAGTTTTGTCAATGGAGATTTAGGGGAACTTGGTTATGTTGCTCCCGAGTATCCAAGCACCATGGTCGCTTCTCTAAAAGGAGATGTTTATGGGTTCGGGGTTGTGCTTTTAGAATTGGTGACTGGGCAAAAACCTCTTGAAGTAACCACTGCTGAGGAGGGATATAAGGGAAACTTGGTGAATTGGGTAAATCGGCTGAATAATTCCGGTCGAATTAAGGATGCTATTGATATAAATCTGTGTGGAAAAGGGAATGATGAAGAAATGTTACAATTCCTGAAAATTACAGCTAACTGTGTCGTTTCTCGGCCCAAGGACAGGTGGTCTATGTATCAGGTTTATCATTCATTGAAAACAATGGCTAAAGACTACAGCTTCTCTGAATTTGATGACGAATTCCCGCTTATATTTGGCAAACAAGATAATGAACCTGTGTAG 1818 41.8 MKISFSFSFLSYISLCLLLFASVSSRAAQEDDVRCLKGLKNSLIDPSRRLSSWDFTNTSVGSLCKFVGLSCWNDRENRILNIELRDMNLSGAISPDVQYCASLQKLDLSGNEFSGSIPQHICKWLPYLVGLDLSFNKFSGSIPSDLADCSYLNSLILSDNALSGTIPVQFVNLGRLSKFSVANNQLTGSIPPFFNKFGREGFEGNSDLCGGPSGSSCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYHSRMSLEKKKRGYGGGDGDGNWADRLRAYKLFQVSLFQKPLVKVKLADLMAATNNFSSENIIVSTRTGTTYKAVLRDGSVLAIKRLNTCKLGEKMFRTEMNRLGLIRHPNLTPLLGFCVVEEEKLLVYKHMSNGTLSSLLHGNGGVLDWPTRFRIALGAARGLAWLHHGCQPPFMHQNICSSVILVDEDYDARIMDFGLARLMSTDSNDSSFVNGDLGELGYVAPEYPSTMVASLKGDVYGFGVVLLELVTGQKPLEVTTAEEGYKGNLVNWVNRLNNSGRIKDAIDINLCGKGNDEEMLQFLKITANCVVSRPKDRWSMYQVYHSLKTMAKDYSFSEFDDEFPLIFGKQDNEPV 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7154685 7156502 - evm.model.ptg000021l.776 HCH13g0776 557281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0776 605 Pfam Protein tyrosine and serine/threonine kinase 318 514 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0776 605 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 194 580 IPR050647 -
HCH13g0776 605 ProSiteProfiles Protein kinase domain profile. 306 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0776 605 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 267 380 - -
HCH13g0776 605 Gene3D Phosphorylase Kinase; domain 1 267 380 - -
HCH13g0776 605 SUPERFAMILY Protein kinase-like (PK-like) 283 577 IPR011009 -
HCH13g0776 605 Gene3D Ribonuclease Inhibitor 29 218 IPR032675 -
HCH13g0776 605 SUPERFAMILY L domain-like 29 199 - -
HCH13g0776 605 Gene3D Transferase(Phosphotransferase) domain 1 381 600 - -
HCH13g0776 605 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 381 599 - -
HCH13g0776 605 CDD STKc_IRAK 312 578 - -
HCH13g0776 605 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 29 218 - -
HCH13g0776 605 Pfam Leucine Rich Repeat 128 149 IPR001611 GO:0005515(InterPro)
HCH13g0776 605 Pfam Leucine Rich Repeat 102 123 IPR001611 GO:0005515(InterPro)
HCH13g0776 605 Pfam Leucine Rich Repeat 176 196 IPR001611 GO:0005515(InterPro)
HCH13g0776 605 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0776 HCH-Chr13:7154685 HCH14g0183 HCH-Chr14:27506950 2.50E-60 dispersed
HCH5g1105 HCH-Chr5:27329209 HCH13g0776 HCH-Chr13:7154685 8.50E-117 transposed
HCH13g0776 HCH-Chr13:7154685 HCH7g1646 HCH-Chr7:48561545 2.40E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81184 PF07714 PK_Tyr_Ser-Thr 3.50E-29 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0776 - - - 0.0