Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0794 ATGGCCTTCCTTCTTCTCCTTCTCCTACCATTCTTACCTACCACCACCGCCACCGGCACCGGCACGGCCACCGCCACTCTCTCCGCCGACTACTACCACTCCTCATGTCCCACATTCACTCAGATAATCCTCAACACAATCACCACTAAGCAAATCACAACTCCCACAACCGCCGCCGCCACCCTCCGTCTCTTCTTCCACGACTGCTTCTCCAACGGCTGCGACGCCTCCCTCCTCCTCTCCAACACCCCCGAACGCAACTCCGACATCAACCTCTCCCTCCCCGGCGACTCCTTCGACGTCATCACACGTGCCAAAACCGCCCTCGAGCTCTCCTGCCCCAACACCGTCTCTTGCTCCGACATCCTCGCTGCCACCACTCGTGACCTCGTAACCATGGTCGGAGGTCCGTACTACAACCTCGTATTCGGTCGTAAAGATTCCATTTCCTCTAAAATCTCATCATTCCAATCCTCTCTTCCAAAACCCAGCATGTCGATTTCTCAAATCATTCATCTCTTCACCTCCAAAGGCTTCACCGTTCAGGAAATGGTGGCGTTGAGTGGGGCCCACACCATTGGTTTCTCTCACTGTACGGAGTTCAGTGATGGAGTTTTTAACTATTCCAGATCGCCGCCGTATGATGATCAATATAATCCAAGGTTTGCTGAGGCCTTGCAGAGGGCTTGTGGGGAGTATAAGAATGATTCGAGTTTATCGGTTTTTAACGATGTGATCACGCCTAATAAGTTTGATAATATGTATTTCAAGAACTTAGAGAGGGGTTTGGGGCTTTTGAAATCTGATGGAGGTTTGTTTAGTGATCCCAGGACTAGGGTTTGGGTGGAGAGATATGCTGCTGATGAGTTTAGTTTTTTTCAGGCTTTTGCTAGAGCTATGGAGAAGTTGAGTGGTTATGGTGTTAAAGTTGGGAATCAAGGTGAGGTTAGACGTAAGTGTGATGCTTTTAATTCATGA 978 49.69 MAFLLLLLLPFLPTTTATGTGTATATLSADYYHSSCPTFTQIILNTITTKQITTPTTAAATLRLFFHDCFSNGCDASLLLSNTPERNSDINLSLPGDSFDVITRAKTALELSCPNTVSCSDILAATTRDLVTMVGGPYYNLVFGRKDSISSKISSFQSSLPKPSMSISQIIHLFTSKGFTVQEMVALSGAHTIGFSHCTEFSDGVFNYSRSPPYDDQYNPRFAEALQRACGEYKNDSSLSVFNDVITPNKFDNMYFKNLERGLGLLKSDGGLFSDPRTRVWVERYAADEFSFFQAFARAMEKLSGYGVKVGNQGEVRRKCDAFNS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7615056 7616033 - evm.model.ptg000021l.794 HCH13g0794 557299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0794 325 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 Gene3D - 30 324 - -
HCH13g0794 325 SUPERFAMILY Heme-dependent peroxidases 27 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 PANTHER - 20 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 FunFam Peroxidase 161 303 - -
HCH13g0794 325 Gene3D Peroxidase, domain 2 161 303 - -
HCH13g0794 325 CDD secretory_peroxidase 27 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH13g0794 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
HCH13g0794 325 ProSiteProfiles Plant heme peroxidase family profile. 26 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 Pfam Peroxidase 49 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0794 325 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0794 HCH-Chr13:7615056 HCH13g0940 HCH-Chr13:12601632 1.70E-71 dispersed
HCH13g0794 HCH-Chr13:7615056 HCH3g0311 HCH-Chr3:1968209 1.70E-103 wgd
HCH13g0794 HCH-Chr13:7615056 HCH8g1358 HCH-Chr8:48399689 1.90E-107 wgd
HCH13g0794 HCH-Chr13:7615056 HCH9g0176 HCH-Chr9:1044251 2.60E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0794 K00430 - csv:105435603 424.476