Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0797 ATGGCTCCAAATTCTGTTGTTGTAACAATTGAGAAACACAACACTTTTCCTTTACTTGAAATCAATGGCTCTGATTCATTGTTGCTTTCTGAGAAACATAAAGCTGCAAGTCCTAAGCAGCTTACTTGGGTTCTTTTTCTCAAAGCTCATAAAGCTTTCTTTTTCTTTTCATGGTTAGCTTTAGCTACTAAAACTGTTTTTGCTTTGGCTAAGAAACGCATTGCTTATGCTGATATTAATGAAGAGGACCCTAAAAGCAAAGGGAAGAGACTGTATAGATTTCTTAAAGCTTTTCTAGCTATTTCTATTGCTGCTCTTGTCATTGAAATCTTTGCCCATTTGAAGAAATGGAATTTGGGATTGGTTAAGCCTTGGCAATTTGAAGTTCATGGGGTTCTTGAGTGGTTTTATATGTTGTGGATGTCATTTAGAGTTGATTATGTTGCTCCTTTGGTTATATTGCTTTCTAAATTCTGCATTGTTTTGTTCTTGATTCAATCGCTCGACCGCCTTGTTCTTTGTATCGGGTGTTTTTGGATTAAGTATAAGAAGTTGAAACCAATGATTCAAGGAGAGGAGTATGATTGTGAAGATCCTTCAAGTTTCCCTATGGTTCTTGTTCAAATTCCAATGTGCAATGAGAGAGAGGTGTATGCACAATCAATTGCTGCTGCTTGTGAGCTTGATTGGCCGAGGAACCGGGTCTTAATTCAAGTCCTAGACGATTCGGACGATGGGAATCTTCAGAATTTAATCAGAGAGGAAGTTTTGTCATGGAATGAGAAGGGAGTCAATATAGTGTATAGACATAGATTGATTCGAACCGGGTACAAAGCTGGGAATCTCAAGTCTGCTATGGAATGTGATTATGTTAAAGATTATGAATTTGTAGCAATTTTAGATGCAGATTTCCAGCCAAATCCTGATTTCCTTAAACAGACTGTCCCCCATTTCAAGGGAAATCCTGAACTGGGTCTTGTCCAGGCTAGATGGACGTTTGTTAACAAGGATGAAAATTTACTTACAAGACTCCAAAACATCAATTTGTGCTTCCATTTTGAAGTGGAACAGCAAGTTAATGGGGTTTTCCTGAATTTCTTTGGATTCAATGGAACGGCAGGCGTTTGGAGAGCTAAAGCTCTTGAGGAATCAGGTGGCTGGCTCGAGAGGACAACGGTGGAAGACATGGACATTGCAGTTCGAGCTCACTTGAATGGTTGGAAATTTGTCTTCCTCAATGATGTTAAGGTGCTATGCGAATTGCCTGAATCATATGAAGCTTATAAGAAACAGCAACATCGATGGCATTCCGGTCCTATGCAGCTCTTCAGATTATGCCTTCCTGATATCATTACTTCAAAGATATCAAAATGGAAGAAGGCCAACTTGATCTTTCTCTTCTTTCTTCTTAGAAAACTGATTCTTCCTTTTTACTCATTCACTTTGTTCTGTATCATACTTCCATTGACAATGTTCATTCCAGAAGCAGAATTGCCTCTCTGGGTAATCTGCTACATTCCAGTCATGATGTCCTTTCTTAACATTCTGCCATCTCCAAAATCATTCCCCTTTTTGATTCCATACCTCTTGTTTGAGAACACAATGTCTGTTACAAAGTTCAACGCCATGGTTTCGGGGCTGTTCCAACTTGGAAGCTCTTACGAATGGGTTGTGACAAAGAAGACAGGAAGGTCATCTGAATCAGACTTCTTAGCCTTTGCCGAAAGAGAATCGAAATCTTCGAACGAAGAGAAGATTCTCAGGAGACATTCTGAGCCAGGCCTTGAAATGTGGAGTAAACTCAAGCAACAACAAGAGAAACAAATGGTTTCCCAGAAGAAGAGAAACATGGTGTATAGAAAAGAGCTTGCCCTTGCTTTTCTTCTGCTCATTGCAGCTGCTAGAAGCATGCTGTCTGCTCATGGAGTTCACTTCTACTTCTTGCTTTTCCAGGGATTATCATTCCTGGTTGTGGGGTTGGATTTGATTGGTGAGCAAATGAACTGA 2007 39.71 MAPNSVVVTIEKHNTFPLLEINGSDSLLLSEKHKAASPKQLTWVLFLKAHKAFFFFSWLALATKTVFALAKKRIAYADINEEDPKSKGKRLYRFLKAFLAISIAALVIEIFAHLKKWNLGLVKPWQFEVHGVLEWFYMLWMSFRVDYVAPLVILLSKFCIVLFLIQSLDRLVLCIGCFWIKYKKLKPMIQGEEYDCEDPSSFPMVLVQIPMCNEREVYAQSIAAACELDWPRNRVLIQVLDDSDDGNLQNLIREEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMECDYVKDYEFVAILDADFQPNPDFLKQTVPHFKGNPELGLVQARWTFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRAKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPDIITSKISKWKKANLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVMMSFLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKTGRSSESDFLAFAERESKSSNEEKILRRHSEPGLEMWSKLKQQQEKQMVSQKKRNMVYRKELALAFLLLIAAARSMLSAHGVHFYFLLFQGLSFLVVGLDLIGEQMN 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7679576 7682117 - evm.model.ptg000021l.797 HCH13g0797 557302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0797 668 FunFam probable xyloglucan glycosyltransferase 5 196 421 - -
HCH13g0797 668 Pfam Glycosyl transferase family group 2 297 505 IPR001173 -
HCH13g0797 668 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 195 422 IPR029044 -
HCH13g0797 668 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 126 667 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
HCH13g0797 668 SUPERFAMILY Nucleotide-diphospho-sugar transferases 205 504 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0797 K20887 - - csv:101208151 1159.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0291 HCH-Chr12:1647979 HCH13g0797 HCH-Chr13:7679576 1.80E-272 dispersed
HCH13g0797 HCH-Chr13:7679576 HCH4g0567 HCH-Chr4:3711248 8.10E-238 dispersed
HCH13g0797 HCH-Chr13:7679576 HCH12g0532 HCH-Chr12:3125612 3.30E-247 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g0407 . 210 374 REM Transcription Factor Family AT1G49480 70.5 1.1e-58 223.4
HCH12g0291 . 1 693 REM Transcription Factor Family AT2G24630 78.0 0.0e+00 1102.0
HCH12g0532 . 1 701 REM Transcription Factor Family AT2G24630 64.5 4.0e-264 907.5
HCH13g0797 . 6 668 REM Transcription Factor Family AT2G24630 67.0 1.5e-258 889.0
HCH4g0567 . 5 699 REM Transcription Factor Family AT2G24630 64.5 8.0e-257 883.2
HCH5g1039 . 4 690 REM Transcription Factor Family AT2G24630 62.6 1.9e-245 845.5
HCH12g0291 . 1 693 REM Transcription Factor Family AT2G24630 78.0 0.0e+00 1102.0
HCH12g0532 . 1 701 REM Transcription Factor Family AT2G24630 64.5 4.0e-264 907.5
HCH13g0797 . 6 668 REM Transcription Factor Family AT2G24630 67.0 1.5e-258 889.0
HCH4g0567 . 5 699 REM Transcription Factor Family AT2G24630 64.5 8.0e-257 883.2
HCH5g1039 . 4 690 REM Transcription Factor Family AT2G24630 62.6 1.9e-245 845.5
HCH12g0291 . 1 693 REM Transcription Factor Family AT2G24630 78.0 0.0e+00 1102.0
HCH12g0532 . 1 701 REM Transcription Factor Family AT2G24630 64.5 4.0e-264 907.5
HCH13g0797 . 6 668 REM Transcription Factor Family AT2G24630 67.0 1.5e-258 889.0
HCH4g0567 . 5 699 REM Transcription Factor Family AT2G24630 64.5 8.0e-257 883.2
HCH5g1039 . 4 690 REM Transcription Factor Family AT2G24630 62.6 1.9e-245 845.5
HCH2g0407 . 210 374 REM Transcription Factor Family AT1G49480 70.5 1.1e-58 223.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33