Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0800 ATGGCTGGGGGTGGGGGAAGGTATTTGATGAAGGAAGTGATACCATTTCCGGCGATGGTAACGATGGAATGCATAAACGTTGGATTAAACACTCTTTTCAAAGCAGCTACTGATAGCGGGATGAGCCACTATGTTTTCGTTGTTTACTCTTATGCTCTTGCTGCCCTTCTCCTTCTTCCTTCTCCCTTCATCTCTCACAGATCGAGACGGCTTCCGCCTCTCAACGTCTCCATACTCTCTAAGATTGCTCTCCTTGGATTAATAGGTTCTTCATCTCAGATAATGGGATACACAGGAATCAATTACAGTTCTCCAACCCTTGCTTCTGCTATCAGCAACCTGGTTCCAGCTTTCACTTTCATTCTTGCCATCATATTCAGGATGGAAAAAGTGATATTGAAAAGAAGAAGCAGTCAAGCAAAAGTAATGGGAACCATAATATCAATATCAGGTGCATTTGTAGTCACTCTTTACAAGGGCCCAAGGATCAATATATTCTCATCTTCAACACCAACAATCTCTCTTTCAGCACCACTAACCTCATCAGATTCTAATTGGGTCTTTGGCAGCCTTCTCTTGACTGGTGAATATATCTTGGTTCCACTTTGGTACATTGTTCAGACAAAAATAATGAAGGAATATCCAGATGAGGCAACAGTGATCTTCTTCTACAACTTAACTGTGACCATCATAGCTGCAATTGTAGGTGTGGTTTCAGAAACAGATTCAAGAGCTTGGATTGTGAGGGAAAATGTAGCATTGGCCTCTGTCTTATGCTCCGGACTTTTTGGATCATGCTTGAACAATACAATTCATACATGGGCACTGCGCTTGAAGGGGCCTGTGTTTGTAGCAATGTTTAAGCCTTTGTCCATTGTTGTTGCCATTATAATGGGAGTTTTGTTTCTTGGTGATGCTCTTTATCTTGGAAGTGTTTTTGGAGCATCTATAATATCAATAGGGTTTTACACTGTAATGTGGGGAAAAGCAAAAGAAGAGATGGGCGATGAAGAAGTTGAAGATCATAATGAAATTGCAGATATACTGGAATCACATGTAAATCAGAAAGTGCCTCTTCTTGGAAGCTACAAGACTGAAGGGATACAGAGATACAGCTCAGATCATGTATAA 1131 40.94 MAGGGGRYLMKEVIPFPAMVTMECINVGLNTLFKAATDSGMSHYVFVVYSYALAALLLLPSPFISHRSRRLPPLNVSILSKIALLGLIGSSSQIMGYTGINYSSPTLASAISNLVPAFTFILAIIFRMEKVILKRRSSQAKVMGTIISISGAFVVTLYKGPRINIFSSSTPTISLSAPLTSSDSNWVFGSLLLTGEYILVPLWYIVQTKIMKEYPDEATVIFFYNLTVTIIAAIVGVVSETDSRAWIVRENVALASVLCSGLFGSCLNNTIHTWALRLKGPVFVAMFKPLSIVVAIIMGVLFLGDALYLGSVFGASIISIGFYTVMWGKAKEEMGDEEVEDHNEIADILESHVNQKVPLLGSYKTEGIQRYSSDHV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7710544 7715236 - evm.model.ptg000021l.800 HCH13g0800 557305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0800 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 330 - -
HCH13g0800 376 PANTHER WAT1-RELATED PROTEIN 18 340 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH13g0800 376 Pfam EamA-like transporter family 28 156 IPR000620 GO:0016020(InterPro)
HCH13g0800 376 Pfam EamA-like transporter family 203 326 IPR000620 GO:0016020(InterPro)
HCH13g0800 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0800 HCH-Chr13:7710544 HCH9g0164 HCH-Chr9:979713 6.00E-89 dispersed
HCH13g0800 HCH-Chr13:7710544 HCH13g0801 HCH-Chr13:7738015 4.70E-78 tandem
HCH13g0800 HCH-Chr13:7710544 HCH9g0161 HCH-Chr9:965277 4.40E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0800 - - - 0.0