Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0807 ATGGATTCAAGCTCCTTCTGGGCTCATCCTAACAAGAGAGAATCATGGAGGACAGTTTTCACATTAGCTTATCAGAGCTTAGGAGTTGTTTATGGAGATTTAAGCACATCACCTTTGTATGTATACAAAAGCACTTTTGCAGAAAACATTCAACATTCAGAAACAAATGAGGAAGTTTATGGGGTTCTTTGTTTTGTGTTTTGGACTTTGACACTAATCCCTTTGCTTAAGTATGTGTTCATAATGCTCAATGCTAATGATAATGGAGAAGGTGGGACTTTTGCTCTGTATTCGCTTCTTTGTCGCCACGCTCGATTGAGCTCTCTGCCTAATCATCAGCTGGCAGATGAGGAGCTTTCTGAATACACAAAAGACAATAGACATGAAATTGAATCCACTGATACGTTTAGTCTTACTTCTTGTCTGAAATCAACATTGGAGAAGTGCAAATTGTTGCAAAGAATGTTGCTTGTTTTAGCCTTATTTGGGACTTGTATGGTTATTGGGGATGGAGTGCTCACACCAGCAATTTCAGTTTTCTCAGCTGTCTCGGGGCTTGAATTATCAATGGCTAAGGAGCATCACCACTATATAGAAGTTCCTCTCACGTGTGGCATACTCGTATTCTTGTTCGCATTGCAGCATTACGGAACTCATCGAGTAGGATTCCTGTTTGCTCCCATTCTAATTATATGGCTTATATGTATGAGTTCTATTGGTATGTATAATATCTTCCATTGGAATCCTCAAGTTTACCAAGCACTCTCCCCATACTACATGTTTAAGTTTTTGAAGAAAACCGGAAAACAAGGTTGGATGGCGTTGGGCGGAATCCTCTTGTGTATAACAGGCTCAGAAGCTATGTTTGCCGATCTTGGACATTTTTCACAGTTTTCTATCAAGATTGCTTTCACTTTTGCGATATATCCATCATTGGTTCTAGCATATATGGGACAAGCTGCTTACCTTTCTAAGCATCACAATCTCGACAATGATTATCGGATTGGATTCTATGTTTCTGTTCCTGAGAAAGTGAGATGGCCGGTTCTTGGCATAGCGATACTTGCAGCGGTTGTTGGCAGTCAAGCCATCATCACTGGCACGTTCTCGATAATCAAACAGTGTTCTTCTTTGGGTTGTTTTCCAAGGGTAAAAATTATTCATACATCTTCTAAAATACACGGCCAGATTTACATTCCACTGATCAACTGGATACTTATGATATTATGTTTGGCTGTTACAATCGGATTTAGAGACACAAAACGCTTGGGTAATGCAGCAGGGTTGGCAGTAATAACCGTTATGCTCGTGTCTACTTGTCTAATGTCTCTTGTAATTGTGTTGTGTTGGCGCAAAAGTATCTGGCTGGCTGCAGCCTTCATACTCTTCTTTGGCTCCATAGAAGCATTGTACTTCTCTGCATCTCTTACTAAGTTCTTTGAAGGCGCTTGGGTTCCTCTTGCGCTTTCATTTACCTTCCTTTTAGTTATGTATGTTTGGCATTATGGCACTTTGAAGAAATATGAGGCTGATGTAGAAAATAAAGTCCCCATCAATTGGCTCCTCAGTATAGGACCCAAAATCGGGATAGTTCGGGTCCGTGGGATTGGCCTTGTACATACTGAACTTGTATCCGGGATCCCTGCCATCTTCTCTCACTTTGTCACCAACCTTCCAGCATTTCACCAAGTTTTAGTCTTTCTCTGCATCAAATCTGTCACGGTACCACGCGTAAGACCCGAGGAAAGGTTCTTAGTGGGAAGAGTCGGGCCAAAGGAATACCGAATCTACCGTTGCATCGCACGATACGGCTATCGCGATGTTCACAAGGATGACTTGGAGTTCGAGAGAGACCTTGCATGCAGTATTGCAGAATTCATACGGTCGGAGAGAAGAGAATACAACGTAGGACCCGGACGTGAAGACATGGAAGACAACGAAAAGTTGACAGTGATTGGAACTTCATCATCACAATTGGATGGTATAAGAATGTGTGACAATGAGACATACTCTTCTCCAATGATAGGCACATCAGAGTTGAGGGAGATAAAGTCTTCAGAGAAAGTGAGGAAAAGGGTGAGATTCCTTCTTCCAGAGAGTCCAAAAATGGATAATGATTCAAGGGGAGAGCTGCAAGAGCTGATGGAAGCAAGAGAGGCAGGAATGGCATTTATAATGGGACACTCATATGTTAAGGCAAAGAAAGGATCAGGATGGATGAAGAAGCTTGTTATTAATTATGGTTATGATTTCTTGAGGAAAAACTCAAGGGGGCCTTCTTATGCTTTGAGCATTCCTTATGCTTCTACTCTAGAAGTGGGGATGGTTTATTATGTTTAA 2340 41.5 MDSSSFWAHPNKRESWRTVFTLAYQSLGVVYGDLSTSPLYVYKSTFAENIQHSETNEEVYGVLCFVFWTLTLIPLLKYVFIMLNANDNGEGGTFALYSLLCRHARLSSLPNHQLADEELSEYTKDNRHEIESTDTFSLTSCLKSTLEKCKLLQRMLLVLALFGTCMVIGDGVLTPAISVFSAVSGLELSMAKEHHHYIEVPLTCGILVFLFALQHYGTHRVGFLFAPILIIWLICMSSIGMYNIFHWNPQVYQALSPYYMFKFLKKTGKQGWMALGGILLCITGSEAMFADLGHFSQFSIKIAFTFAIYPSLVLAYMGQAAYLSKHHNLDNDYRIGFYVSVPEKVRWPVLGIAILAAVVGSQAIITGTFSIIKQCSSLGCFPRVKIIHTSSKIHGQIYIPLINWILMILCLAVTIGFRDTKRLGNAAGLAVITVMLVSTCLMSLVIVLCWRKSIWLAAAFILFFGSIEALYFSASLTKFFEGAWVPLALSFTFLLVMYVWHYGTLKKYEADVENKVPINWLLSIGPKIGIVRVRGIGLVHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVTVPRVRPEERFLVGRVGPKEYRIYRCIARYGYRDVHKDDLEFERDLACSIAEFIRSERREYNVGPGREDMEDNEKLTVIGTSSSQLDGIRMCDNETYSSPMIGTSELREIKSSEKVRKRVRFLLPESPKMDNDSRGELQELMEAREAGMAFIMGHSYVKAKKGSGWMKKLVINYGYDFLRKNSRGPSYALSIPYASTLEVGMVYYV 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7797032 7802685 - evm.model.ptg000021l.807 HCH13g0807 557312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0807 779 Pfam K+ potassium transporter integral membrane domain 22 522 IPR053951 -
HCH13g0807 779 NCBIfam potassium uptake protein 22 779 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
HCH13g0807 779 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 13 779 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
HCH13g0807 779 Pfam K+ potassium transporter C-terminal domain 535 777 IPR053952 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0807 HCH-Chr13:7797032 HCH4g0006 HCH-Chr4:63819 0.00E+00 dispersed
HCH1g1017 HCH-Chr1:58176627 HCH13g0807 HCH-Chr13:7797032 0.00E+00 wgd
HCH13g0807 HCH-Chr13:7797032 HCH9g0158 HCH-Chr9:943132 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0807 K03549 - csv:101218141 1398.65