Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0809 ATGATGTCGGACGGTTTGGTTTTCAAGCAGAATCCTGGGCATGGCGACGTGCTGTTTTTTGGGAGTGGCGATTCCTTTTTTCAAGGAACGATGGGCATGGAGCAAACCTCAAAGAGGCGGTCCTTTTTCAGCTCTCCGGACGAGTTTTTCGATGACGACTATTACGATGAACAGATGCCGGAGAAGAAGCGCCGGCTTACTCAAGAGCAGGTGCATCTGCTTGAGATTAGTTTTGAGGCAGAGAACAAACTGGAGCCAGAGCGAAAGACTCAGTTGGCTAAGAATCTGGGTCTGCAGCCAAGGCAAGTGGCCGTATGGTTTCAAAACCGTCGTGCTCGATGGAAAACAAAGCAGATTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCCTTCTTTCTAACTATGACTATGTTGTCAAGGAGAATGAGAGGCTCAAAGCTGAGGTAACATCTTTAACTGAGAAACTTCAAGCAAAAGAGGTGGTTGGATCATCATTTCAAGCTCAGAAATCTGAGCCTCTTACAGCAGATCAACTCCTTACTCCTATTGTTCCGTATGGCATGAAGGTTGAGGATCACCATAGTTCCGGGAGCAATGGAAGTGCCGTGGTGGATGAGGACGGTCCTCAGCTTCTGGACAGTGGAGATTCTTACTTCCTGAGCAATGACTATGATGACTGTGTTTTGCCAGTTTTTGGGGTAAACTCAGAGGAGGACGATGGGAGTGACGACGGTCAGGGTTACTTCTCGGATGTCTTCACAGCAGCCGGCCAGCAAACTCATGAGGCCGATCCTTTGACGTGGTGGGACTGGACTTCGTAA 828 47.95 MMSDGLVFKQNPGHGDVLFFGSGDSFFQGTMGMEQTSKRRSFFSSPDEFFDDDYYDEQMPEKKRRLTQEQVHLLEISFEAENKLEPERKTQLAKNLGLQPRQVAVWFQNRRARWKTKQIERDYDLLKSSYDSLLSNYDYVVKENERLKAEVTSLTEKLQAKEVVGSSFQAQKSEPLTADQLLTPIVPYGMKVEDHHSSGSNGSAVVDEDGPQLLDSGDSYFLSNDYDDCVLPVFGVNSEEDDGSDDGQGYFSDVFTAAGQQTHEADPLTWWDWTS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7825718 7828156 - evm.model.ptg000021l.809 HCH13g0809 557314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0809 275 Coils Coil 144 164 - -
HCH13g0809 275 Pfam Homeobox associated leucine zipper 117 159 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g0809 275 CDD homeodomain 62 118 IPR001356 GO:0003677(InterPro)
HCH13g0809 275 Pfam Homeodomain 62 115 IPR001356 GO:0003677(InterPro)
HCH13g0809 275 FunFam Homeobox-leucine zipper protein HAT5 55 119 - -
HCH13g0809 275 SUPERFAMILY Homeodomain-like 47 119 IPR009057 -
HCH13g0809 275 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677(InterPro)
HCH13g0809 275 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677(InterPro)
HCH13g0809 275 Gene3D - 55 123 - -
HCH13g0809 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 35 211 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
HCH13g0809 275 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH13g0809 275 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677(InterPro)
HCH13g0809 275 SMART HOX_1 60 121 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0809 HCH-Chr13:7825718 HCH3g0280 HCH-Chr3:1777841 1.30E-27 dispersed
HCH13g0809 HCH-Chr13:7825718 HCH9g0154 HCH-Chr9:901841 1.30E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32825 PF00046 Homeodomain 1.30E-16 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0809 K09338 - csv:101210106 397.897