Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g0809 | ATGATGTCGGACGGTTTGGTTTTCAAGCAGAATCCTGGGCATGGCGACGTGCTGTTTTTTGGGAGTGGCGATTCCTTTTTTCAAGGAACGATGGGCATGGAGCAAACCTCAAAGAGGCGGTCCTTTTTCAGCTCTCCGGACGAGTTTTTCGATGACGACTATTACGATGAACAGATGCCGGAGAAGAAGCGCCGGCTTACTCAAGAGCAGGTGCATCTGCTTGAGATTAGTTTTGAGGCAGAGAACAAACTGGAGCCAGAGCGAAAGACTCAGTTGGCTAAGAATCTGGGTCTGCAGCCAAGGCAAGTGGCCGTATGGTTTCAAAACCGTCGTGCTCGATGGAAAACAAAGCAGATTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCCTTCTTTCTAACTATGACTATGTTGTCAAGGAGAATGAGAGGCTCAAAGCTGAGGTAACATCTTTAACTGAGAAACTTCAAGCAAAAGAGGTGGTTGGATCATCATTTCAAGCTCAGAAATCTGAGCCTCTTACAGCAGATCAACTCCTTACTCCTATTGTTCCGTATGGCATGAAGGTTGAGGATCACCATAGTTCCGGGAGCAATGGAAGTGCCGTGGTGGATGAGGACGGTCCTCAGCTTCTGGACAGTGGAGATTCTTACTTCCTGAGCAATGACTATGATGACTGTGTTTTGCCAGTTTTTGGGGTAAACTCAGAGGAGGACGATGGGAGTGACGACGGTCAGGGTTACTTCTCGGATGTCTTCACAGCAGCCGGCCAGCAAACTCATGAGGCCGATCCTTTGACGTGGTGGGACTGGACTTCGTAA | 828 | 47.95 | MMSDGLVFKQNPGHGDVLFFGSGDSFFQGTMGMEQTSKRRSFFSSPDEFFDDDYYDEQMPEKKRRLTQEQVHLLEISFEAENKLEPERKTQLAKNLGLQPRQVAVWFQNRRARWKTKQIERDYDLLKSSYDSLLSNYDYVVKENERLKAEVTSLTEKLQAKEVVGSSFQAQKSEPLTADQLLTPIVPYGMKVEDHHSSGSNGSAVVDEDGPQLLDSGDSYFLSNDYDDCVLPVFGVNSEEDDGSDDGQGYFSDVFTAAGQQTHEADPLTWWDWTS | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7825718 | 7828156 | - | evm.model.ptg000021l.809 | HCH13g0809 | 557314 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g0809 | 275 | Coils | Coil | 144 | 164 | - | - | |
HCH13g0809 | 275 | Pfam | Homeobox associated leucine zipper | 117 | 159 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH13g0809 | 275 | CDD | homeodomain | 62 | 118 | IPR001356 | GO:0003677(InterPro) | |
HCH13g0809 | 275 | Pfam | Homeodomain | 62 | 115 | IPR001356 | GO:0003677(InterPro) | |
HCH13g0809 | 275 | FunFam | Homeobox-leucine zipper protein HAT5 | 55 | 119 | - | - | |
HCH13g0809 | 275 | SUPERFAMILY | Homeodomain-like | 47 | 119 | IPR009057 | - | |
HCH13g0809 | 275 | PRINTS | Lambda-repressor HTH signature | 88 | 97 | IPR000047 | GO:0003677(InterPro) | |
HCH13g0809 | 275 | PRINTS | Lambda-repressor HTH signature | 97 | 113 | IPR000047 | GO:0003677(InterPro) | |
HCH13g0809 | 275 | Gene3D | - | 55 | 123 | - | - | |
HCH13g0809 | 275 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 35 | 211 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
HCH13g0809 | 275 | ProSitePatterns | 'Homeobox' domain signature. | 92 | 115 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
HCH13g0809 | 275 | ProSiteProfiles | 'Homeobox' domain profile. | 57 | 117 | IPR001356 | GO:0003677(InterPro) | |
HCH13g0809 | 275 | SMART | HOX_1 | 60 | 121 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0809 | HCH-Chr13:7825718 | HCH3g0280 | HCH-Chr3:1777841 | 1.30E-27 | dispersed | |
HCH13g0809 | HCH-Chr13:7825718 | HCH9g0154 | HCH-Chr9:901841 | 1.30E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32825 | PF00046 | Homeodomain | 1.30E-16 | CL0123 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g0809 | K09338 | - | csv:101210106 | 397.897 |