Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0815 ATGGATCATCCCTCAGAGACTTTCAGGCACAAGTGCGCAGCTTGCTTCAGGCAGTTCAATAAGATTGAACACTTGGTGGAGCATATGAGGATCTCATTTCACTCACTTCATGAACCCACTTGTGCCATTTGCCACAAACACTGCAGATCTTTTGAATCTCTCAGAGAACATCTTATTGGGCCACTTCCAAAACAAGAATGTAAAAACATATTCAACACGCGAGGATGCAAGTTCTGCTTGGTCATCCTTGATAGTCCTTGCTCAAAAAAAGTCCACCAAGAAAGATGCCAATTCTCGAGTGTAAATTCTGGAATTATTGCTCGTTTGGGAAACCTAGGAATTCGTGACAATTTAAATATGGAAAGCGGAAGATCAAGAGGGACAGGAATTGTTGCATTGGCTTGCAAGACAGTAGGTGGTGGCAGTGATGGATCACTAGACATCTGTGCCAAGCTCTGCCTCATTGATGAAAATGAAAATATCATCTTCTATAGTTATGTTAGACCAACAATTCCTGTAACTAATTATAGGTATGAAACGACGGGTATTCGTCCAGAACAGTTGAGAGATGCAATGCCACTAAAACAAATTCAGAAGAAGATTCAAGACTTCCTCTATAATGGTGGTGAAAAGCCAAGGATTCTGGTGGGTCACGGTGTGGATGATGATCTCAAACGTCTGCAAATTGGATATCCAGCACCAATGATAAGGGACACAGCAAATTATCCACCATTGATGAAAACGAGCAAGCTCAGCAATTCACTCAAGTACCTAGCTCAAGTATATCTCGGATTCGATATTCAAAATGGCATACAAGATCCTTATGAAGAGTGTGTAGCCAGCATGAGGCTATACAAGAGAATGAGAAGTCAAGTTCATAAGATAGAGAAGTATCCATTGGCTTCTGACCCACAAAACAAGAACAATTTCGCAGCTTGGAGACAGAGTGAACTTGAGAAGATGACCCCAGAAAAGATGTTGGAAATCTCAAGGTCTGATTACTACTGTTGGTGCTTCGATTCCAGGATTTGA 1032 41.38 MDHPSETFRHKCAACFRQFNKIEHLVEHMRISFHSLHEPTCAICHKHCRSFESLREHLIGPLPKQECKNIFNTRGCKFCLVILDSPCSKKVHQERCQFSSVNSGIIARLGNLGIRDNLNMESGRSRGTGIVALACKTVGGGSDGSLDICAKLCLIDENENIIFYSYVRPTIPVTNYRYETTGIRPEQLRDAMPLKQIQKKIQDFLYNGGEKPRILVGHGVDDDLKRLQIGYPAPMIRDTANYPPLMKTSKLSNSLKYLAQVYLGFDIQNGIQDPYEECVASMRLYKRMRSQVHKIEKYPLASDPQNKNNFAAWRQSELEKMTPEKMLEISRSDYYCWCFDSRI 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7951720 7955084 - evm.model.ptg000021l.815 HCH13g0815 557320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0815 343 Pfam Exonuclease 154 263 IPR013520 -
HCH13g0815 343 Gene3D - 127 305 IPR036397 GO:0003676(InterPro)
HCH13g0815 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 39 IPR013087 -
HCH13g0815 343 SUPERFAMILY Ribonuclease H-like 135 291 IPR012337 -
HCH13g0815 343 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 10 340 IPR047021 GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER)
HCH13g0815 343 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
HCH13g0815 343 CDD REX4_like 131 286 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
HCH13g0815 343 SMART exoiiiendus 129 294 IPR013520 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0815 HCH-Chr13:7951720 HCH5g0011 HCH-Chr5:74972 5.30E-92 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0815 - - - 0.0