Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0821 ATGAGTAAGGAAAAGAAAAAAAAGATTCATTTTAGTAAAGTCTATTCGTTTTTGTGTATTCGGCCTTTGTTTAAGGAGCATCATGAACAAGTTGGCAAAAGTGGTTACTCCAGAGTTGTGTATTGTAATGATCCTGATAAACCAGAAGCAACTCAGTTGAATTATAGGGGAAATTATGTGTCAACTACTAAGTATACAGCTGCTAATTTTATCCCAAAGTCTTTATTTGAGCAGTTCAGGAGGGTTGCAAATATTTACTTTTTGGTTGTAGCTTGTGTTTCTTTCAGTCCGTTGGCGCCTTTTACAGCTCCTAGTGTTCTTGCTCCATTATTGGTGGTTATTGGAGCTACCATGGCCAAGGAAGCTATTGAAGATTGGAGGCGAAGAAAACAGGATATAGAGGCAAATAATCGAAAGGTTAAAGTGTTGCTTAAAAATCACAAATTTGAAGAAACCAGATGGAAGAACCTCCGAGTTGGTGATGTTGTAAAGGTTTATAAGGATGATTATTTTCCTGCTGATCTGGTGCTGCTTTCATCTAGCTATGGAGATGGAATTTGCTATGTTGAGACCATGAATCTTGATGGGGAAACAAATTTAAAGTTGAAGCATTCCTCGGAAGTAACATCCCATCTTCGCAATGAAGACTCTTTCAAGAATTTTACAGCAGTAATCAAATGTGAGGACCCTAATGAACATCTGTATTCATTTGTTGGAACGCTGTATTACAATGGTGATCAGTACCCTCTGTCTCTACAGCATATTCTTTTGCGAGATTCTAAGCTTAAAAACACCAAATACGTTTATGGAGTTGTTATATTTACTGGCCATGATACAAAGGTGATGATGAATGCTACTGCTCCTCCTTCCAAAAGAAGTAAAATTGAGAAGAAAATGGATAGGATAATTTACGTCCTTTTCAGTACTCTAATTTTGATCTCTTTCATTGGATCTGTCACTTTTGGAGTGACAACTGAAAATGACATTGAGGATGGAAGGAACAGAAGATGGTATCTTCGCCCAGATGACACCACAGTTTTGTATGACCCCGAGCAAGCACCACTTGCTGCTTTTCTTCATTTCTTTACAGCTCTTATGTTGTATGGATACTTGATACCGATATCATTATATGTTTCCATTGAAATTGTGAAGGTTTTACAAAGTATTTTCATTAACCAAGACCAGGCAATGTATTATGAGGAAACAGATAAGCCAGCTCATGCCCGCACTTCTAATTTGAATGAGGAGCTTGGTCAGGTTTATATGATACTATCTGACAAAACGGGTACTTTGACATGTAACTCAATGGATTTTGTAAAATGTTCAGTAGCTGGAACTACTTATGGTCGCGGTGTGACCGAGGTGGAGAGGGCCCTGATGAGAAGAAGAGGAGACATTCTGCCTGAATTTGTTAACGAATCATCTGATATACCATACCATGATGGTAACAACACAGAGATTGGAAAGTCAATCGGAGGTTTCAATTTTAGAGATGAGCGCATCATGAATGGGCAATGGGTTAAAGAGCCTCATTCAGACATCATACAGAAATTTTTTCGAGTACTAGGAATCTGTCATACCGCAATTCCTGTCGTAAATAAAGAAACGGGTGAAATTTCCTTTGAAGCAGAATCACCTGATGAAGCAGCTTTTGTAATAGCTGCAAGGGAGACTGGCTTTGAGTTTTTTAGGAGGACACAGACAAGTATATCATTGCTCGAGTTAGATTACTTCAGTGGAAAAAAGGTTGAGCGAGTGTATAAGCTTCTTCATGTCTTGGAGTTCAGTAATTCTCGCAAACGAATGTCAGTAATTGTTAGGGATGCTGAGAATCAATTGTTGCTTCTCTCCAAGGGTGCGGATAGTGTGATGTTTGAAAAGCTGTCAAAAGATGGGCGGAAGTACGAATCTCGGACTAAGAAGCACATTAAGGAATATGCTGAAGCAGGCCTACGAACCTTGGTAATTGCATATCGTGAGCTTCGTGAAGAAGAATATAAAATATGGGAAGAAGAGTTTTTAAAGGCCAAAACTTCTGTCACTGCAGATCGAGATGCATTGATGGATGCAGCTGCTGATGATATTGAGATGAACTTGATTCTTCTTGGTGCCACAGCTGTTGAGGACAAATTGCAAACTGGGGTACCCGAGTGTATTGATAAGCTAGCTCACGCTGGAATCAAATTATGGGTATTAACTGGAGATAAGATGGAAACTGCTGTTAATATAGGGTATGCTTGCAGTTTACTGAGGAAAGGTATGGCCCTCTTTGAAATCACACTTGATTCACCTGAAATCGATGAACTGGAAAAACAAGGAGATAAGGGAGCTGTTGCCAAGGCATCTCTTGAAAGTGTGAGGAACCAAATCAAGAAAGGATTATCTCAGATTAGTAATGCCAAGGAAATTTCTCCAGCTGAAGAAAGTTCCCCTTCGTTTGGCTTGGTAATTGACGGCAAGTCCTTGGAATTTTCTCTCAACAAAAATATAGAGGCAATGTTTTTTGAGCTTGCTGTCAATTGCGATTCCGTTATATGCTGTCGTTCTTCACCCAAACAGAAAGCTCTTGTTACAAGGATGGTAAAGTTGAAAACTGGTAAAACAATACTATCTATTGGCGATGGGGCAAATGATGTTGGTATGCTTCACGAGGCCGATATTGGAGTTGGCATCAGTGGTGTCGAAGGGATGCAGGCAGTGATGGCTAGTGATTTCTCAATAGCTCAGTTTCGATTTTTGGAACGTTTGTTACTGGTGCATGGTCACTGGTGTTACAGGCGCATAGCAATGATGATATGCTACTTCTTCTACAAGAATATAGCTTTTGGATTAACTTTATTTTGGTTCGAGGCCTATGCTTCATTTTCTGGTCAGCCTGCCTATAATGATTGGTATATGTCATTTTACAATGTCTTCTTCACTTCACTTCCTGTGATTGCTCTTGGTGTTTTTGATCAAGATGTTTCGTCACGACTTTGCCTCAAGTATCCGTCTCTATATCTAGAGGGAGTAGATGATGTCCTCTTCAATTGGCTCAGAATACTTGGTTGGATGTTTAATGGAATTCTCAGCTCAATAGTCATCTACTTCTCTTCCGTCAACTCAATCAATAACCAGGCATTCCGTTCAGATGGACGAGTTGTTGACTACGATATTCTTGGCGTCACGATGTATACTTGTGTTGTTTGGACTGTAAACTGCCAGATGGCGCTTTCCGTTAACTACTTCACTTGGATTCAACATTTTTTCATCTGGGGAAGTATTGCATTATGGTACATGTTTTTGTTAGTCTATGGTTCTCTCTCGCCAACGATATCAACAACAGCATACAAGGTTTTGGTTGAAGCCTGCATCCCAAGTCCTCTCTATTGGTTGTTGACCTTACTGGTTGTCATGGGCAGTTTACTACCTTATTTCTGCTACAGAGGTTTTCAGACAAGATTCCTACCGATGTGCCACGATATCATACAAATAAATCGGTTGGAGGGATTGGAGGATTCTGGGACAGAGACTTCTGGTGAATTGCCTGTGCTAGTCCAGGACAGGCTACTACATTTGAAGGAGAGACTGTGGAAAAGAAATTTGAGAACTTGA 3594 39.93 MSKEKKKKIHFSKVYSFLCIRPLFKEHHEQVGKSGYSRVVYCNDPDKPEATQLNYRGNYVSTTKYTAANFIPKSLFEQFRRVANIYFLVVACVSFSPLAPFTAPSVLAPLLVVIGATMAKEAIEDWRRRKQDIEANNRKVKVLLKNHKFEETRWKNLRVGDVVKVYKDDYFPADLVLLSSSYGDGICYVETMNLDGETNLKLKHSSEVTSHLRNEDSFKNFTAVIKCEDPNEHLYSFVGTLYYNGDQYPLSLQHILLRDSKLKNTKYVYGVVIFTGHDTKVMMNATAPPSKRSKIEKKMDRIIYVLFSTLILISFIGSVTFGVTTENDIEDGRNRRWYLRPDDTTVLYDPEQAPLAAFLHFFTALMLYGYLIPISLYVSIEIVKVLQSIFINQDQAMYYEETDKPAHARTSNLNEELGQVYMILSDKTGTLTCNSMDFVKCSVAGTTYGRGVTEVERALMRRRGDILPEFVNESSDIPYHDGNNTEIGKSIGGFNFRDERIMNGQWVKEPHSDIIQKFFRVLGICHTAIPVVNKETGEISFEAESPDEAAFVIAARETGFEFFRRTQTSISLLELDYFSGKKVERVYKLLHVLEFSNSRKRMSVIVRDAENQLLLLSKGADSVMFEKLSKDGRKYESRTKKHIKEYAEAGLRTLVIAYRELREEEYKIWEEEFLKAKTSVTADRDALMDAAADDIEMNLILLGATAVEDKLQTGVPECIDKLAHAGIKLWVLTGDKMETAVNIGYACSLLRKGMALFEITLDSPEIDELEKQGDKGAVAKASLESVRNQIKKGLSQISNAKEISPAEESSPSFGLVIDGKSLEFSLNKNIEAMFFELAVNCDSVICCRSSPKQKALVTRMVKLKTGKTILSIGDGANDVGMLHEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLLVHGHWCYRRIAMMICYFFYKNIAFGLTLFWFEAYASFSGQPAYNDWYMSFYNVFFTSLPVIALGVFDQDVSSRLCLKYPSLYLEGVDDVLFNWLRILGWMFNGILSSIVIYFSSVNSINNQAFRSDGRVVDYDILGVTMYTCVVWTVNCQMALSVNYFTWIQHFFIWGSIALWYMFLLVYGSLSPTISTTAYKVLVEACIPSPLYWLLTLLVVMGSLLPYFCYRGFQTRFLPMCHDIIQINRLEGLEDSGTETSGELPVLVQDRLLHLKERLWKRNLRT 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8064648 8072109 - evm.model.ptg000021l.821 HCH13g0821 557326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0821 1197 SUPERFAMILY Calcium ATPase, transduction domain A 142 283 IPR008250 -
HCH13g0821 1197 Gene3D - 111 287 - -
HCH13g0821 1197 Gene3D - 698 912 IPR023214 -
HCH13g0821 1197 Gene3D - 532 678 IPR023299 GO:0000166(InterPro)
HCH13g0821 1197 FunFam Phospholipid-transporting ATPase 544 702 - -
HCH13g0821 1197 Pfam E1-E2 ATPase 137 326 - -
HCH13g0821 1197 Pfam Cation transport ATPase (P-type) 525 629 - -
HCH13g0821 1197 SFLD Haloacid Dehalogenase 406 923 - -
HCH13g0821 1197 FunFam Phospholipid-transporting ATPase 116 286 - -
HCH13g0821 1197 SUPERFAMILY HAD-like 420 927 IPR036412 -
HCH13g0821 1197 Coils Coil 116 143 - -
HCH13g0821 1197 NCBIfam phospholipid-translocating P-type ATPase 55 1157 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
HCH13g0821 1197 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
HCH13g0821 1197 SFLD p-type atpase 406 923 IPR044492 -
HCH13g0821 1197 CDD P-type_ATPase_APLT_Dnf-like 57 1030 - -
HCH13g0821 1197 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 26 1160 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
HCH13g0821 1197 Pfam Phospholipid-translocating ATPase N-terminal 40 102 IPR032631 -
HCH13g0821 1197 NCBIfam HAD-IC family P-type ATPase 106 219 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH13g0821 1197 NCBIfam HAD-IC family P-type ATPase 844 954 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH13g0821 1197 FunFam Phospholipid-transporting ATPase 702 912 - -
HCH13g0821 1197 SUPERFAMILY Calcium ATPase, transmembrane domain M 49 1149 IPR023298 -
HCH13g0821 1197 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 431 664 IPR023299 GO:0000166(InterPro)
HCH13g0821 1197 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
HCH13g0821 1197 PRINTS P-type cation-transporting ATPase superfamily signature 872 891 - -
HCH13g0821 1197 Pfam Phospholipid-translocating P-type ATPase C-terminal 900 1150 IPR032630 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1223 HCH-Chr10:43417310 HCH13g0821 HCH-Chr13:8064648 0.00E+00 dispersed
HCH13g0821 HCH-Chr13:8064648 HCH3g0149 HCH-Chr3:953368 0.00E+00 dispersed
HCH13g0821 HCH-Chr13:8064648 HCH1g0823 HCH-Chr1:56880617 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0821 K01530 - gmx:100817020 1819.67