Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0822 ATGGAGAATCTTTCTGAAAAGAAATATCCGGTGAATGCAAATGATTACAATTTACATGAAGAAGTTGGTGAAGGTGTGAGTGCCACTGTATACAAAGCAATGTGCATTCCATTCAATGAGATTGTGGCTATAAAGGTTCTTGATCTGGAAAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATCGATCATCCAAATTTATTAAGAGCACATTGTTCTTTCACAGCTGGTCACCATCTTTGGGTTGTAATGCCATACATGGCCGGGGGATCTTGCCTTCATATTATGAAATCTTCTTTTCCTGAAGGTTTTGATGAGCCTGTCATAGCTACTCTATTGCGGGAGGTTCTTAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCCGGGAACATTTTAGTTGACTATAATGGTACAGTCAAGGTAGCTGATTTTGGAGTTTCAGCATGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACTTTTGTCGGAACTCCTTGCTGGATGGCTCCTGAAGTTATGCAGCAGTTACATGGATACGACTTTAAGGCAGACATTTGGTCATTTGGAATAACTGCACTTGAACTGGCTCATGGGCATGCACCATTTTCAAAGTTTCCTCCCATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGACAAGAGATTCTCTAAGTCCTTCAAAGAGATGGTGGCAACATGCCTTGTGAAGGATCCAAAGAAACGACCTAGTTCAGAGAAGCTCTTAAAGCACCCTTTTTTTAAACAAGCACGTTCGGTTGATTATCTTACTCGTACAATACTTGATGGGCTTTCTCCTCTCGGTGAACGTTTTAAGAAGCTAAAGGCCAAAGAGGCTGATCTTCTGGGGCAGAATAAGGCTATGTATGGGGATAAGGAGCATTTGTCACAGCAAGAATATATTCGAGGAATTAGTGCCTGGAACTTCAATCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAGGATGATGATATGTCAAATATTGAAGATCTAGATGTACATACAAGGCAAAGAAACAAGAATAATGAATTTACCTTTCCTGTAGAGGGTTCATCACTTGAAAGGCTGAACCACCCAACCGATGCAGCTAATCAGGAGGATGGGTTCAGTGATCTTCATGATCTGGAGAGTTCGCTTTCTTCTTTTCCGATGAAACCTCTTGAAGCACTTAAAGATTGTTTTGACATCTATGAAGATATAAGCACAGATAATGTAAGACCAGTGGATCGAGAAAATGGAAGAATTGAGGGTGAGAGTTCAGGGCAAAGTAGTTCTTTACCACGTCAGTTCATGGCAGAGAATAAGAAGTCTTTCAGTGGTTCATTAATTTCTGATAATGCTGTTTCTCCTAAAAAGATTATTGTAGATGGTGATAGGGACCATCTGCAGTCAAAATTCCCATCTGAACGTAACTACAGTGGTTCATTATTATATCGACAGAAAAGAGATACAAATAACATTTCATCTGTTGATGATGCATCAGATGGAACAGTTGTCCAACGCAAGGGGCGTTTTAAAGTTACTTCAGCAGAGCTCAGTCCGAAGGGTCCTATGACTGGCTCATTTAGCCCAGTTTGTGGAGGGTCAACAAGTCCAACATCCATGAACCTTACAGCTGCGCTACTCCTCCCGTCAATGCAATGTATTTTACAGCAGAACATGCTGCAAAGGGAAGAAATCATTAAAATGATAAAGTATTTGGAACAAAACAATGGTAAGAATGCAGAGGCATCAGAGGCAGTCACCAACGACCTCCTGCAGATATCGCCGGCTTCCTCCAGGGAAAAAGAGTTGCATTCTCAGATTGTTCATTTGCAACAAAGAATTGATAATCTTGTCGAGGAACTCGAGAAACAGAAGTTCAAAAATGCTGAGTTTGAAAGACAATTCTTTGCTATGGCTAACAAAGAGGAAAGCATAAAAGAATGA 2022 40.65 MENLSEKKYPVNANDYNLHEEVGEGVSATVYKAMCIPFNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMAGGSCLHIMKSSFPEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILVDYNGTVKVADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKFPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKQARSVDYLTRTILDGLSPLGERFKKLKAKEADLLGQNKAMYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTRQRNKNNEFTFPVEGSSLERLNHPTDAANQEDGFSDLHDLESSLSSFPMKPLEALKDCFDIYEDISTDNVRPVDRENGRIEGESSGQSSSLPRQFMAENKKSFSGSLISDNAVSPKKIIVDGDRDHLQSKFPSERNYSGSLLYRQKRDTNNISSVDDASDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGSTSPTSMNLTAALLLPSMQCILQQNMLQREEIIKMIKYLEQNNGKNAEASEAVTNDLLQISPASSREKELHSQIVHLQQRIDNLVEELEKQKFKNAEFERQFFAMANKEESIKE 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8095930 8106802 + evm.model.ptg000021l.822 HCH13g0822 557327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0822 673 Gene3D Transferase(Phosphotransferase) domain 1 97 319 - -
HCH13g0822 673 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0822 673 CDD STKc_OSR1_SPAK 14 277 - -
HCH13g0822 673 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0822 673 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
HCH13g0822 673 MobiDBLite consensus disorder prediction 379 399 - -
HCH13g0822 673 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 656 IPR047173 GO:0043539(InterPro)
HCH13g0822 673 MobiDBLite consensus disorder prediction 436 459 - -
HCH13g0822 673 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
HCH13g0822 673 Coils Coil 626 660 - -
HCH13g0822 673 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
HCH13g0822 673 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
HCH13g0822 673 SUPERFAMILY Protein kinase-like (PK-like) 13 298 IPR011009 -
HCH13g0822 673 SMART serkin_6 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0822 HCH-Chr13:8095930 HCH6g1181 HCH-Chr6:46251093 7.00E-149 dispersed
HCH12g1055 HCH-Chr12:7866225 HCH13g0822 HCH-Chr13:8095930 1.50E-56 transposed
HCH6g0302 HCH-Chr6:4435157 HCH13g0822 HCH-Chr13:8095930 2.20E-153 transposed
HCH13g0822 HCH-Chr13:8095930 HCH9g0143 HCH-Chr9:820812 4.70E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81186 PF00069 Pkinase 4.70E-59 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0822 K08835 - csv:101205102 1224.92