Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0833 ATGCAGACCGCTGTATTGGCTCTGCCTCTATCTTTTTCTCCGACTATTCCGTTTCCTAAACCCCCGAGACGAAGCCCTAACCCTAATCTCCCTCATTTCTCTCACATTCCCTTTCCTTCTCGAACTCTCTCATGGCACGGATCCTTCTGCACCTTTCCTTCTTCTTCTTCCCGCGGTTCCAATCGGAAACTCGAGAAGTTCTCGGTAATGGCTTCTTCGGTGCCGGAGAGCGCTGGAGAATATGCGGAATCGGCTGGTTTGATTAACACCATGCGGCTTGGTTCAATGTTTGGAATTTGGTATCTCTTGAATATCTTCTTCAACATTTACAACAAACAGGTTCTTAAAGTCTATCCATTTCCAACTACGGTGACAGCTTTTCAATTCGGGTGTGGGACTGTTATAACAATATTAATGTGGGCATTTAATTTTCATCCCAAACCCAAGTTCAGTCGTTCCCAGTTTGCAGCAATTCTTCCGCTTGCTATTGTGCACACAATTGGAAACATATTGACCAATGTCAGTCTTGGGAAAGTTGCTGTTTCTTTCACTCACACTATCAAAGCAATGGAGCCCTTTTTCACTGTCCTGCTCTCTGCTCTGTTCTTGGCTGAGAGGCCTACTCTCTGGGTTGTTCTCTCCCTCGTACCTATTGTAGGAGGAGTGGCTCTGGCTTCCTCTACTGAAGCCTCGTTTAATTGGATTGGCTTCAGTAGTGCCATGGCTTCTAACCTTACAAATCAATCTCGAAATGTATTCAGCAAAAAGCTCATGGTTAATAAAGAGGTGAGACTGGACAATATCAATCTCTTCTCTGTAATAACCATAATCTCATTTATCTTGTTGGTTCCCTCTGCTCTTCTCCTTGAAGGTGTTAAGTTTACTCCTTCACACCTGCAATCTATTGCTAACCAAGGATTTAATGTTAGAGAGCTATGCATCAGATTACTTCTCTCTGGCATCTGTTTTCATAGTTATCAGCAGATTTCTTATTCAATATTGCAGCAAATTTCACCAGTAACCCATGCAGTGGGAAATTCTCTAAAGCGAGTAGTAGTTATAGTCTCCTCAGTTATTTTCTTCAGAACAACAATCTCACCCATAAATGCCCTTGGAACTGCCATGGCTCTAATTGGAGTTTTCTTGTATTCGAGGGCGAAGCGTGTGAAACCGAAAAAGCTAAAGGCTGTATAA 1194 42.88 MQTAVLALPLSFSPTIPFPKPPRRSPNPNLPHFSHIPFPSRTLSWHGSFCTFPSSSSRGSNRKLEKFSVMASSVPESAGEYAESAGLINTMRLGSMFGIWYLLNIFFNIYNKQVLKVYPFPTTVTAFQFGCGTVITILMWAFNFHPKPKFSRSQFAAILPLAIVHTIGNILTNVSLGKVAVSFTHTIKAMEPFFTVLLSALFLAERPTLWVVLSLVPIVGGVALASSTEASFNWIGFSSAMASNLTNQSRNVFSKKLMVNKEVRLDNINLFSVITIISFILLVPSALLLEGVKFTPSHLQSIANQGFNVRELCIRLLLSGICFHSYQQISYSILQQISPVTHAVGNSLKRVVVIVSSVIFFRTTISPINALGTAMALIGVFLYSRAKRVKPKKLKAV 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8411107 8418137 - evm.model.ptg000021l.833 HCH13g0833 557338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0833 397 PANTHER SOLUTE CARRIER FAMILY 35 89 387 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
HCH13g0833 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 136 227 - -
HCH13g0833 397 Pfam Triose-phosphate Transporter family 91 384 IPR004853 -
HCH13g0833 397 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 92 392 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
HCH13g0833 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 309 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0833 HCH-Chr13:8411107 HCH7g1518 HCH-Chr7:47715233 4.90E-65 dispersed
HCH13g0833 HCH-Chr13:8411107 HCH3g0343 HCH-Chr3:2193587 1.30E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0833 K15283 - csv:101217436 551.206