Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0848 ATGGCTTCTTCCAGCTACTCGAACTCGCCATGCGCAGCATGCAAGTTCTTGAGAAGAAAATGCTTAGCCGATTGCATTTTTGGTCCCTACTTCCCCCCTGAAGAGCCCACCAAATTCTCAAACGTTCATAAGATCTTTGGAGCCAGCAATGTCAGCAAGCTTCTTCATGAAGTTCAGCCTCATCAGCGAGAAGATGCCGTCAACTCATTGGCATATGAGGCCGAGGCCCGGATGAAAGACCCCGTCTACGGTTGTGTTGGCGCCATCTCCGTGTTGCAACGACAGGTCCTCCGGCTACAGAAGGAATTGGACGCTACCAACGCTGATCTTATCCGATATGCCAGCGGTGGTGGCGCCACTCAATTCGGAAGAACGGCGGCTGCTGGTTCACTTCGCCATCATTCTGGTGGGTATTTTCATTCTCCATTGAGTAATGATAATAATAGTGATCCTTATTGCCATGACAAAGAAGAAGACAATTGA 483 49.28 MASSSYSNSPCAACKFLRRKCLADCIFGPYFPPEEPTKFSNVHKIFGASNVSKLLHEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVLRLQKELDATNADLIRYASGGGATQFGRTAAAGSLRHHSGGYFHSPLSNDNNSDPYCHDKEEDN 160
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 8747991 8748473 - evm.model.ptg000021l.848 HCH13g0848 557353
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0848 160 Coils Coil 89 109 - -
HCH13g0848 160 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
HCH13g0848 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 115 - -
HCH13g0848 160 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
HCH13g0848 160 MobiDBLite consensus disorder prediction 138 160 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0848 HCH-Chr13:8747991 HCH2g0088 HCH-Chr2:6108360 9.20E-39 dispersed
HCH13g0848 HCH-Chr13:8747991 HCH3g0362 HCH-Chr3:2309309 4.10E-47 wgd
HCH13g0848 HCH-Chr13:8747991 HCH8g1410 HCH-Chr8:48776485 6.10E-51 wgd
HCH13g0848 HCH-Chr13:8747991 HCH9g0123 HCH-Chr9:676969 7.20E-60 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32828 PF03195 LOB 1.60E-40 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0848 - - - 0.0