Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g0848 | ATGGCTTCTTCCAGCTACTCGAACTCGCCATGCGCAGCATGCAAGTTCTTGAGAAGAAAATGCTTAGCCGATTGCATTTTTGGTCCCTACTTCCCCCCTGAAGAGCCCACCAAATTCTCAAACGTTCATAAGATCTTTGGAGCCAGCAATGTCAGCAAGCTTCTTCATGAAGTTCAGCCTCATCAGCGAGAAGATGCCGTCAACTCATTGGCATATGAGGCCGAGGCCCGGATGAAAGACCCCGTCTACGGTTGTGTTGGCGCCATCTCCGTGTTGCAACGACAGGTCCTCCGGCTACAGAAGGAATTGGACGCTACCAACGCTGATCTTATCCGATATGCCAGCGGTGGTGGCGCCACTCAATTCGGAAGAACGGCGGCTGCTGGTTCACTTCGCCATCATTCTGGTGGGTATTTTCATTCTCCATTGAGTAATGATAATAATAGTGATCCTTATTGCCATGACAAAGAAGAAGACAATTGA | 483 | 49.28 | MASSSYSNSPCAACKFLRRKCLADCIFGPYFPPEEPTKFSNVHKIFGASNVSKLLHEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVLRLQKELDATNADLIRYASGGGATQFGRTAAAGSLRHHSGGYFHSPLSNDNNSDPYCHDKEEDN | 160 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 8747991 | 8748473 | - | evm.model.ptg000021l.848 | HCH13g0848 | 557353 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g0848 | 160 | Coils | Coil | 89 | 109 | - | - | |
| HCH13g0848 | 160 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 107 | IPR004883 | - | |
| HCH13g0848 | 160 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 8 | 115 | - | - | |
| HCH13g0848 | 160 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
| HCH13g0848 | 160 | MobiDBLite | consensus disorder prediction | 138 | 160 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g0848 | HCH-Chr13:8747991 | HCH2g0088 | HCH-Chr2:6108360 | 9.20E-39 | dispersed | |
| HCH13g0848 | HCH-Chr13:8747991 | HCH3g0362 | HCH-Chr3:2309309 | 4.10E-47 | wgd | |
| HCH13g0848 | HCH-Chr13:8747991 | HCH8g1410 | HCH-Chr8:48776485 | 6.10E-51 | wgd | |
| HCH13g0848 | HCH-Chr13:8747991 | HCH9g0123 | HCH-Chr9:676969 | 7.20E-60 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 32828 | PF03195 | LOB | 1.60E-40 | No_clan | HCH | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g0848 | - | - | - | 0.0 |