Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g0856 | ATGGGATCTGGTAATGGGTTACACTCAACAGTGTTTGGATTGGATGCTAAGTGGCTGATTGATCCGAAGCAGATTTTTGTTGGGCCAAAGATTGGAGAAGGTGCACATGGCAAAGTGTATGAGGGAAAATACCGGAACCACAATGTTGCGATTAAAATAATTCGAAGAGGTGAAAGTCCAGAAGAAATTGCAAAAACTGAGGCACGCTTTGCTCGGGAGGTTGCGATGTTATCCAGAGTTCAGCACAAAAATCAAGCAAAATTTATAGGAGCTTGCAAGGTACCTAATATGGTCATAGTAACTGAGCTTCTATCAGGGGGTACTTTGCGGAAGTACCTGGTGAGTATGCGGCCAAGGTGCTTGGACTTGCATGAGGCCGTTGGTTTTGCACTTGATATTGCCCGTGCAATGGAATGTTTGCACTCCCATGGCATTATTCATCGCGATTTGAAACCTGAGAATTTGATATTGACCGCGGATCACAAAACCATTAAACTTGCGGACTTTGGTCTTGCTAGAGAAGAGTCAGTAACAGAGATGATGACTGCTGAAACTGGGACATATAGGTGGATGGCTCCAGAGCTATACAGTACAGTCACTCTAAGACATGGAGAGAAGAAGCATTACAATCACAAGGTGGATGTTTACAGCTTTGGAATTGTACTGTGGGAGCTTGTCCTAAATAAATTGCCTTTTGAAGGCATGTCAAATCTACAAGCAGCTTATGCTGCTGCTTTTAAGAGTTTACGACCCAGTGCCGAAAACCTCCCGGAGGCTATGGCTCCAATCATAACTTCCTGTTGGAATGAGGATCCAGACACAAGGCCTAACTTCAGCCAAATCATACAGATGCTTTTGAACTATTTATCAACCATTTCACCACCTGAGCATGTTATACCACAAAAAATGCACACATCTGAGAATGCAGTGCTGCCCCCTGAGTCTCCTGGAACAAGTTCTTTGATGGCCAAACGAGATAGCACCGGGGAAGTCCCAAATGGCATCGGAGAAGAGAAACCGAAAAGTTTCTTCTTCTGCTTTACTGGTCACTGTTGCTAA | 1059 | 44.19 | MGSGNGLHSTVFGLDAKWLIDPKQIFVGPKIGEGAHGKVYEGKYRNHNVAIKIIRRGESPEEIAKTEARFAREVAMLSRVQHKNQAKFIGACKVPNMVIVTELLSGGTLRKYLVSMRPRCLDLHEAVGFALDIARAMECLHSHGIIHRDLKPENLILTADHKTIKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRHGEKKHYNHKVDVYSFGIVLWELVLNKLPFEGMSNLQAAYAAAFKSLRPSAENLPEAMAPIITSCWNEDPDTRPNFSQIIQMLLNYLSTISPPEHVIPQKMHTSENAVLPPESPGTSSLMAKRDSTGEVPNGIGEEKPKSFFFCFTGHCC | 352 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 9061632 | 9064982 | + | evm.model.ptg000021l.856 | HCH13g0856 | 557361 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g0856 | 352 | PRINTS | Tyrosine kinase catalytic domain signature | 139 | 157 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| HCH13g0856 | 352 | PRINTS | Tyrosine kinase catalytic domain signature | 213 | 235 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| HCH13g0856 | 352 | PRINTS | Tyrosine kinase catalytic domain signature | 256 | 278 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| HCH13g0856 | 352 | PRINTS | Tyrosine kinase catalytic domain signature | 101 | 114 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| HCH13g0856 | 352 | MobiDBLite | consensus disorder prediction | 309 | 334 | - | - | |
| HCH13g0856 | 352 | Gene3D | Phosphorylase Kinase; domain 1 | 14 | 104 | - | - | |
| HCH13g0856 | 352 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 19 | 286 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
| HCH13g0856 | 352 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 52 | IPR017441 | GO:0005524(InterPro) | |
| HCH13g0856 | 352 | CDD | STKc_MAP3K-like | 31 | 285 | - | - | |
| HCH13g0856 | 352 | SUPERFAMILY | Protein kinase-like (PK-like) | 17 | 311 | IPR011009 | - | |
| HCH13g0856 | 352 | FunFam | Kinase suppressor of Ras 1 | 14 | 104 | - | - | |
| HCH13g0856 | 352 | Gene3D | Transferase(Phosphotransferase) domain 1 | 105 | 314 | - | - | |
| HCH13g0856 | 352 | FunFam | serine/threonine-protein kinase HT1 | 106 | 307 | - | - | |
| HCH13g0856 | 352 | SMART | serkin_6 | 25 | 289 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| HCH13g0856 | 352 | MobiDBLite | consensus disorder prediction | 311 | 326 | - | - | |
| HCH13g0856 | 352 | ProSiteProfiles | Protein kinase domain profile. | 25 | 289 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| HCH13g0856 | 352 | Pfam | Protein tyrosine and serine/threonine kinase | 29 | 285 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| HCH13g0856 | 352 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 145 | 157 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g0856 | HCH-Chr13:9061632 | HCH14g0551 | HCH-Chr14:34471222 | 3.30E-73 | dispersed | |
| HCH13g0856 | HCH-Chr13:9061632 | HCH8g1427 | HCH-Chr8:48871440 | 2.00E-155 | wgd | |
| HCH13g0856 | HCH-Chr13:9061632 | HCH9g0113 | HCH-Chr9:592760 | 3.70E-157 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 81188 | PF07714 | PK_Tyr_Ser-Thr | 5.40E-58 | CL0016 | HCH | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g0856 | - | - | - | 0.0 |