Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0856 ATGGGATCTGGTAATGGGTTACACTCAACAGTGTTTGGATTGGATGCTAAGTGGCTGATTGATCCGAAGCAGATTTTTGTTGGGCCAAAGATTGGAGAAGGTGCACATGGCAAAGTGTATGAGGGAAAATACCGGAACCACAATGTTGCGATTAAAATAATTCGAAGAGGTGAAAGTCCAGAAGAAATTGCAAAAACTGAGGCACGCTTTGCTCGGGAGGTTGCGATGTTATCCAGAGTTCAGCACAAAAATCAAGCAAAATTTATAGGAGCTTGCAAGGTACCTAATATGGTCATAGTAACTGAGCTTCTATCAGGGGGTACTTTGCGGAAGTACCTGGTGAGTATGCGGCCAAGGTGCTTGGACTTGCATGAGGCCGTTGGTTTTGCACTTGATATTGCCCGTGCAATGGAATGTTTGCACTCCCATGGCATTATTCATCGCGATTTGAAACCTGAGAATTTGATATTGACCGCGGATCACAAAACCATTAAACTTGCGGACTTTGGTCTTGCTAGAGAAGAGTCAGTAACAGAGATGATGACTGCTGAAACTGGGACATATAGGTGGATGGCTCCAGAGCTATACAGTACAGTCACTCTAAGACATGGAGAGAAGAAGCATTACAATCACAAGGTGGATGTTTACAGCTTTGGAATTGTACTGTGGGAGCTTGTCCTAAATAAATTGCCTTTTGAAGGCATGTCAAATCTACAAGCAGCTTATGCTGCTGCTTTTAAGAGTTTACGACCCAGTGCCGAAAACCTCCCGGAGGCTATGGCTCCAATCATAACTTCCTGTTGGAATGAGGATCCAGACACAAGGCCTAACTTCAGCCAAATCATACAGATGCTTTTGAACTATTTATCAACCATTTCACCACCTGAGCATGTTATACCACAAAAAATGCACACATCTGAGAATGCAGTGCTGCCCCCTGAGTCTCCTGGAACAAGTTCTTTGATGGCCAAACGAGATAGCACCGGGGAAGTCCCAAATGGCATCGGAGAAGAGAAACCGAAAAGTTTCTTCTTCTGCTTTACTGGTCACTGTTGCTAA 1059 44.19 MGSGNGLHSTVFGLDAKWLIDPKQIFVGPKIGEGAHGKVYEGKYRNHNVAIKIIRRGESPEEIAKTEARFAREVAMLSRVQHKNQAKFIGACKVPNMVIVTELLSGGTLRKYLVSMRPRCLDLHEAVGFALDIARAMECLHSHGIIHRDLKPENLILTADHKTIKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRHGEKKHYNHKVDVYSFGIVLWELVLNKLPFEGMSNLQAAYAAAFKSLRPSAENLPEAMAPIITSCWNEDPDTRPNFSQIIQMLLNYLSTISPPEHVIPQKMHTSENAVLPPESPGTSSLMAKRDSTGEVPNGIGEEKPKSFFFCFTGHCC 352
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 9061632 9064982 + evm.model.ptg000021l.856 HCH13g0856 557361
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0856 352 PRINTS Tyrosine kinase catalytic domain signature 139 157 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0856 352 PRINTS Tyrosine kinase catalytic domain signature 213 235 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0856 352 PRINTS Tyrosine kinase catalytic domain signature 256 278 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0856 352 PRINTS Tyrosine kinase catalytic domain signature 101 114 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0856 352 MobiDBLite consensus disorder prediction 309 334 - -
HCH13g0856 352 Gene3D Phosphorylase Kinase; domain 1 14 104 - -
HCH13g0856 352 PANTHER SERINE-THREONINE PROTEIN KINASE 19 286 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH13g0856 352 ProSitePatterns Protein kinases ATP-binding region signature. 31 52 IPR017441 GO:0005524(InterPro)
HCH13g0856 352 CDD STKc_MAP3K-like 31 285 - -
HCH13g0856 352 SUPERFAMILY Protein kinase-like (PK-like) 17 311 IPR011009 -
HCH13g0856 352 FunFam Kinase suppressor of Ras 1 14 104 - -
HCH13g0856 352 Gene3D Transferase(Phosphotransferase) domain 1 105 314 - -
HCH13g0856 352 FunFam serine/threonine-protein kinase HT1 106 307 - -
HCH13g0856 352 SMART serkin_6 25 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0856 352 MobiDBLite consensus disorder prediction 311 326 - -
HCH13g0856 352 ProSiteProfiles Protein kinase domain profile. 25 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0856 352 Pfam Protein tyrosine and serine/threonine kinase 29 285 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0856 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0856 HCH-Chr13:9061632 HCH14g0551 HCH-Chr14:34471222 3.30E-73 dispersed
HCH13g0856 HCH-Chr13:9061632 HCH8g1427 HCH-Chr8:48871440 2.00E-155 wgd
HCH13g0856 HCH-Chr13:9061632 HCH9g0113 HCH-Chr9:592760 3.70E-157 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81188 PF07714 PK_Tyr_Ser-Thr 5.40E-58 CL0016 HCH PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0856 - - - 0.0