Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0889 ATGGATTTTGGTTTAACTTTAAACCCCCTCATAATAGCCGTCTCTGTCTTTGCAGCAATTATCTCCGCCGGCTCTCTTCTCAAACTCTTCTCCACCAGACACCTTAATCTCCCTCCCGGCTGCATGGGCCTGCCCTTTTTTGGAGAGACTCTCGGCTTTCTCAGGCCTCATCATTCCAACTCTCTTGGCACCTTCTTGCAACAACACCGTTCCAGATACGGGAAGGTGTTCAAATCCCATCTATTTGGTTCTTCAGCCATTGTTTCGTGTGATCGAGAGCTTAATATGTTTGTTCTTCAGAACGACGATAAGCTTTTCAAAGTGAGTTATCCAAAGGCAATGCATGGAATTCTTGGACATAATTCTTTGCTTATAGCGACCGGAGAAACTCACAAGAAGCTGAGAGCGGTCATCGTCGGCTTCGTCAGCTGGTCGAAGTCCAAACCCAGTTTTCTTCATTGCATGGAGAAGATGACTGTCTCATTAATGGAGTCATGGAGAAGCCTCAATCAAGTCTTCTTCTACAAAGAAATCAAGATGTTTGCGTTAGACCTTATGGTGAAGCAATTATTGGGGATTGAACCAGACGATCCTGTGGGGACCTCAAAGATATTAGAAGAATTTGAAACATATATGAACGGGTTTGTTTCTTTCCCTCTGAATCTCCCCGGAACTCCATATGCCAAAGCCGTAAAGGCGAGGGAAAGACTTTCTTCCATTGTTAAAGAGATAATGAGAGAGAGGAAAAGAAGAGGTATGGAGGGGCTAGAAATGGAAGGGGATGACTTTCTGAATGTGATAATTTCAAATTGGAAGCTTAATGATGAAGAAATAGTGAGTGTTGTGTTGGATATTTTGCTTGGAGGTTATGAGACAACAGCAACCCTTATGGGATTGATTGTTTACTTTGTTGGACATTCACCAGATGTTTTTGCAAAACTAAAGGAAGAACATCATGCAATAAGAGATGGTAAAAAGGAAGGGGAACCTCTCAATTTGGATGATTATAAGCAAATGGAATTCACAACTTATGTGATATATGAAGCTATGAGATGTGGGAATGTGGTCAAATTCTTGCACAGAGAAGCTCTAAAAGATGTCAAATTCAAAGAAATTTTGATACCCTCAGGATGGAAAGTTCATCCAGTCTTCACAGCAGTTCATCTGGATCCGGCCATTCATGAAAATCCTCAACAATTCAATCCTTGGAGGTGGATTGATAAAAAGATGAGCAAAAAAGTGACACCATTTGGTGGAGGACCACGGCTATGTCCAGGCATTGAGCTTGCTAAAGTTGAGATTGCTTTCTTCCTCCATCATCTTGTCCTTAATTATAGGTGGAAGACAAGATCAGATGAATGTCCAATAGCTTACCCATATGTGAAATTTTATAGAGACTTGTTGCTGGAAATTGAGCCAGTTTCTTAA 1428 41.32 MDFGLTLNPLIIAVSVFAAIISAGSLLKLFSTRHLNLPPGCMGLPFFGETLGFLRPHHSNSLGTFLQQHRSRYGKVFKSHLFGSSAIVSCDRELNMFVLQNDDKLFKVSYPKAMHGILGHNSLLIATGETHKKLRAVIVGFVSWSKSKPSFLHCMEKMTVSLMESWRSLNQVFFYKEIKMFALDLMVKQLLGIEPDDPVGTSKILEEFETYMNGFVSFPLNLPGTPYAKAVKARERLSSIVKEIMRERKRRGMEGLEMEGDDFLNVIISNWKLNDEEIVSVVLDILLGGYETTATLMGLIVYFVGHSPDVFAKLKEEHHAIRDGKKEGEPLNLDDYKQMEFTTYVIYEAMRCGNVVKFLHREALKDVKFKEILIPSGWKVHPVFTAVHLDPAIHENPQQFNPWRWIDKKMSKKVTPFGGGPRLCPGIELAKVEIAFFLHHLVLNYRWKTRSDECPIAYPYVKFYRDLLLEIEPVS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10014381 10019005 - evm.model.ptg000021l.889 HCH13g0889 557394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0889 475 Gene3D Cytochrome P450 28 462 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0889 475 SUPERFAMILY Cytochrome P450 30 454 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0889 475 PRINTS P450 superfamily signature 288 305 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0889 475 PRINTS P450 superfamily signature 415 424 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0889 475 PRINTS P450 superfamily signature 424 435 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0889 475 PRINTS P450 superfamily signature 344 355 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0889 475 CDD CYP90-like 69 473 - -
HCH13g0889 475 Pfam Cytochrome P450 38 454 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0889 475 PANTHER CYTOCHROME P450 26 36 449 - GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
HCH13g0889 475 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0889 475 PRINTS E-class P450 group I signature 414 424 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0889 475 PRINTS E-class P450 group I signature 424 447 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0889 475 PRINTS E-class P450 group I signature 383 407 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g0889 475 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 417 426 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH13g0889 475 FunFam Cytochrome P450 724B1 32 472 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0889 HCH-Chr13:10014381 HCH4g1474 HCH-Chr4:11150924 4.40E-81 dispersed
HCH13g0889 HCH-Chr13:10014381 HCH1g0373 HCH-Chr1:51158760 1.30E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0889 K12639 - csv:101215045 677.552