Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0895 ATGGCTTCTCTTTGTAGTTTTTTTATTCTTTTCTTCTCTTACTTTCTAACAACACCAATCTCTGCTTTCTCCTCACCATCACTTCAGAGCCCTGATCTTGTAGTTCAAGAAGTTGAAAGGAGCATCAATGCATCAAGGAGAAACTTGGGTTATTTGTCTTGTGGCACAGGGAACCCCATTGATGATTGCTGGAGATGTGACCCGAATTGGTCCAACAATAGGAAGAGGTTGGCTGATTGTGCAATTGGGTTTGGTAAAGATGCCATCGGAGGAAGAAACGGGCGGTTCTATGTAGTCACCGACTCCGGTGATGACGACCCCGTAAACCCCCGGCCGGGCACTCTCCGCCACGCGGTCATACAGAATGAGCCATTGTGGATTATCTTCCAAAGAGACATGGTAATCAGGCTGAACCAAGAGCTAGTAATGAACTCATTCAAGACCATAGACGGCAGGGGCGCCAGCGTCCACATTGCTGGAGGGCCATGCATCACCATCCATCATGTCACTAACATCATCATCCACGGCATCCACATACATGACTGTAAGCAAGGAGGGAATGGTAATATACGAGACTCCCCACAGCATTCTGGGTGGTGGACTGTATCAGACGGTGATGGGGTTTCCATTTTTGGAGGGAGAAATATCTGGATTGACCATTGCTCTCTCTCGAACTGCAACGATGGGCTGATTGATGCCATCCATGGCTCCACGGCCATCACCATTTCTAATAACTATATGACGCATCATGACAAGGTTATGCTTTTGGGACACAGTGATTCTTACACACAAGACAAAAACATGCAAGTTACTATTGCCTTTAATCATTTTGGAGAAGGCCTTGTCCAAAGAATGCCAAGGTGCAGACATGGGTATTTTCATGTAGTAAACAACGACTACACACACTGGGAAATGTATGCAATTGGAGGGAGTGCATCGCCAACAATATACAGCCAAGGGAACCGATTTGCTGCGCCGTACAATAGGTTTCACAAGGAGGTGACAAAACACGAGGATGCGGCGGAGAGCGAATGGAGGCAGTGGAACTGGCGGTCGGAGGGTGACTTGATGTTGAATGGAGCTTACTTCCGACAGTCCGGCGCCGGCGCCTCCTCCAGCTACGCTAGGGCTAACAGCCTCAGTGCAAGACCTTCTTCTCTTGTCGGCTCCATCACCGTCACCGCAGGTGCTCTCGTGTGCCGGAAAGGCTCCCGTTGCTGA 1221 49.06 MASLCSFFILFFSYFLTTPISAFSSPSLQSPDLVVQEVERSINASRRNLGYLSCGTGNPIDDCWRCDPNWSNNRKRLADCAIGFGKDAIGGRNGRFYVVTDSGDDDPVNPRPGTLRHAVIQNEPLWIIFQRDMVIRLNQELVMNSFKTIDGRGASVHIAGGPCITIHHVTNIIIHGIHIHDCKQGGNGNIRDSPQHSGWWTVSDGDGVSIFGGRNIWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFAAPYNRFHKEVTKHEDAAESEWRQWNWRSEGDLMLNGAYFRQSGAGASSSYARANSLSARPSSLVGSITVTAGALVCRKGSRC 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10187138 10188902 - evm.model.ptg000021l.895 HCH13g0895 557400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0895 406 Gene3D - 57 399 IPR012334 -
HCH13g0895 406 SUPERFAMILY Pectin lyase-like 42 400 IPR011050 -
HCH13g0895 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
HCH13g0895 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
HCH13g0895 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
HCH13g0895 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
HCH13g0895 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
HCH13g0895 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
HCH13g0895 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
HCH13g0895 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
HCH13g0895 406 Pfam Pectate lyase 141 323 IPR002022 -
HCH13g0895 406 SMART amb_all 132 329 IPR002022 -
HCH13g0895 406 PANTHER PECTATE LYASE 18-RELATED 18 403 IPR045032 GO:0030570(InterPro)
HCH13g0895 406 FunFam Pectate lyase 57 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0895 HCH-Chr13:10187138 HCH3g0395 HCH-Chr3:2574366 1.50E-173 dispersed
HCH13g0895 HCH-Chr13:10187138 HCH4g0072 HCH-Chr4:395562 1.20E-188 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0895 K01728 - csv:101217834 720.694