Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0906 ATGTATTTATCAGAAAAACCCCGTCCAATCGACTTCTACAAAGAATCATCTTCCCCACCAGACCGAGACATGATTATCGAAACCCTACCACCACCTCCACACCACCACCACCACTTAATTCTAGGCGACAGCAGCGGCGGAGAAGAGCCGGAAATAAAAGCTCCCAAGAAGCGGGCCGAAACTTGGGTCCAAGAAGAAACCCGAAGCCTCATCAACTTCCGCCGTGAAGTCGATGGCCTTTTCAATACTTCCAAATCCAATAAACATCTCTGGGAACAAATCTCTTCCAAAATGAGAGATAAGGGCTTTGATCGTTCCCCTACTATGTGTACGGACAAATGGAGGAATTTGCTTAAGGAGTTTAAGAAAGCTAGGCAGCTTGCTAAAGGCGGGGGTGGTGGTGGTAGGTCTGCCAAGATGACGTATTATGAGGAGCTTGAGGAGTTGTTGAGAGATAGAACTAAGAATAATGGGGGTTATAAGAGCCCTAATTCTCTTAAAGTTGATCCTTTTATTCAATTTTCTGATAAGAGTCTTGATGATGCTAATATTCCGTTTGGATCTTTGGAAGCTAATGACCGGTCAACCGTTAATATGGAAAGGCGGTTGGATTCTGATAGTGATCCTCTTGCAATTACTGCTGCAGATGCAGTTGGAGCTAGTGGTGTAGCTCCTTGGAATTGGAGAGAGACCCCTGGAAATGTGGCTGAGGCACATTCATATTGTGGGAGGATTATAACTGTCAAGCTGGGGGATTACACCAGAAGAATTGGTATCGATGGAACAGCAGAAGCTATTAAGGAGGCAATCAAGTCTGCATTCAGGATAAGGACAAAGAGGGCATTTTGGTTGGAGGATGAAGATCAGGTTGTCCGGAGTCTAGATAGAGAGATGCCACTGGGGAATTACACTCTTCATCTTGATGAGGGAATCACCATAAAGATATGTCTTTATGATGACAATGACCCTGTAGTACGTACAGAGGAAGTAACATTCTATACGGAGGATGATTTTCGTGATTTTCTTAATCGACGAGGTTTGTCCGGTTTAAGAGAAATGACTAATTGTTTAAGAGAAATGACTAATTACCGACGCATTGATACTATGGACGATCTTCATTCTGGTGCAATGTATCAGGGGGTGAGGCTCTTAGGGGATTAG 1161 43.93 MYLSEKPRPIDFYKESSSPPDRDMIIETLPPPPHHHHHLILGDSSGGEEPEIKAPKKRAETWVQEETRSLINFRREVDGLFNTSKSNKHLWEQISSKMRDKGFDRSPTMCTDKWRNLLKEFKKARQLAKGGGGGGRSAKMTYYEELEELLRDRTKNNGGYKSPNSLKVDPFIQFSDKSLDDANIPFGSLEANDRSTVNMERRLDSDSDPLAITAADAVGASGVAPWNWRETPGNVAEAHSYCGRIITVKLGDYTRRIGIDGTAEAIKEAIKSAFRIRTKRAFWLEDEDQVVRSLDREMPLGNYTLHLDEGITIKICLYDDNDPVVRTEEVTFYTEDDFRDFLNRRGLSGLREMTNCLREMTNYRRIDTMDDLHSGAMYQGVRLLGD 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10625091 10627492 + evm.model.ptg000021l.906 HCH13g0906 557411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0906 386 FunFam trihelix transcription factor GT-1 62 124 - -
HCH13g0906 386 Gene3D - 62 124 - -
HCH13g0906 386 PANTHER FI21293P1 43 355 - -
HCH13g0906 386 MobiDBLite consensus disorder prediction 1 22 - -
HCH13g0906 386 CDD GT1 60 125 - -
HCH13g0906 386 SMART sant 58 120 IPR001005 -
HCH13g0906 386 Pfam Myb/SANT-like DNA-binding domain 61 149 IPR044822 -
HCH13g0906 386 ProSiteProfiles Myb-like domain profile. 54 118 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0084 HCH-Chr11:1114038 HCH13g0906 HCH-Chr13:10625091 6.50E-11 dispersed
HCH13g0906 HCH-Chr13:10625091 HCH4g0089 HCH-Chr4:484869 2.20E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32833 PF13837 Myb_DNA-bind_4 2.30E-19 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0906 - - - 0.0