Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g0934 | ATGGAGGAAAATTTAGTCCCTTATGTTGAACCAGAAGCTCAAGAAGAAGAAAGAGATCAAAGAGACCCAGAAAGCAATCCATTGAATGAACCTCTCCTCAAAAGAAGCAGAACCCTCTCATCCAATCCTCTTGCCATTGTTGGAACCAAAGTTTCCCTTATAGAAAGCTTGGATTATGAGATCAATGAAAATGATCTCTTTAAGCATGATTGGAGAAGAAGATCAAAAGTTCAAGTTTTGCAGTATATATTCTCTAAATGGACATTGGCTTTCCTTGTGGGGCTTCTTACTGGTATTATTGCTACTCTTATCAATCTTGCTATTGAAAATATTGCTGGCTACAAGCTTTTGAGAGTAGTTGAGTATATAGCTCAAGAAAGGTACTTAATGGGGTTTGTCTATTTTACCACTGCAAATTTCCTTCTCACTTTTGTTGCTGCTGTTCTCTGTGTATGCTTTGCCCCAACCGCGGCGGGGCCTGGCATACCCGAAATCAAAGCTTATCTCAATGGTATAGATACTCCTAATATGTTTGGTGCTACAACATTGATTGTTAAGATCGTTGGAAGTATTGGAGCTGTCGCTGCTGGCCTAGATCTTGGGAAAGAAGGACCTCTAGTACACATTGGCAGCTGCATTGCATCCTTACTTGGCCAAGGGGGTCCCGATAATTATCGTGTGAAATGGACCTGGCTACGTTATTTCAATAACGATCGTGATCGTCGGGATCTTATCACTTGTGGATCGTCTTCAGGAGTTTGTGCAGCTTTCCGAGCTCCTGTTGGCGGTGTTCTATTTGCTCTTGAAGAGGTGGCTACTTGGTGGAGGAGTTCCCTCCTCTGGAGAAACTTTTTCAGCACAGCCATTGTTGTCGTTATTCTAAGAACTTTCATCGAAGTATGCAAAGCAGGCCAGTGTGGGCTTTTCGGACAAGGAGGGCTTATAATGTTTGATGTTAGTAGTGTTTCTGTTAGTTATCATGTTATGGACATTATACCAGTTGCTATCATTGGCCTCCTTGGTGGATTTCTGGGAAGCCTTTACAATCACTTTCTGCACAAAGTCTTGAGGTTGTACAACCTCATCAATCAGAAGGGAAGAATGCATAAACTCCTACTTGCCTTGGCAGTTTCAATCTTCACTTCAGTGTGCCAATACACTCTCCCCTATCTTGCTCAGTGTACACCGTGTAACCCGTCTCTTCCAGCGTCGGTCTGTCCCACCAACGGTCGGTCTGGCAACTTCAAGCAATTTAACTGTCCAAAGGGTTACTACAACGACCTAGCAACCCTTCTTCTTACCACAAATGATGATGCTGTTCGAAATATATTCTCAGTTAACACTCCACAAGAATATCAACCCTTATCCCTCGTAATCTTCTTCATACTTTATTGTATCTTGGGATTGATTACCTTCGGCATTGCTGTGCCGTCTGGACTCTTCCTCCCCATCATCTTAATGGGTTCTGGTTACGGTCGCCTAATTGGCCTTCTTATGCAACCTTACACGAATTTAGATCAGGGGCTCCTTGCCGTTCTTGGTGCAGCCTCACTAATGGCTGGCTCAATGAGGATGACAGTTTCACTTTGCGTCATATTCCTTGAACTCACCAACAATCTTCTCTTGCTTCCCATGACAATGATTGTCCTTCTGATAGCAAAAACAGTAGGAGACAGTTTCAACCCAAGTATCTATGAGATTATTCTACACTTAAAAGGCCTTCCCTTCTTGGATGCAAATCCAGAGCCTTGGATGAGAAACATCACGGTCGGAGAACTTGCTGATGCTAAGCCGTCAGTAGTGACACTTCGCGGATTGGAAAAAGTATCACGCATTGTAGAAGTCCTGAAGAACACCACACACAATGGTTTTCCTGTCGTGGATGCTGATGCGGTCGTGCCACCGGTGGGAATGGCTGTTGGAGCAACAGAACTTCATGGACTAGTCTTGAGAGCTCACCTACTTCAGGTGCTGAAGAAAAAATGGTTCTCGAGGGAGCGAAGGAGGACGGAGGAATGGGAAGTGAGAGAGAAATTTACTTGGGTTGAACTGGCTGAGAGGGAAAGCAAGATCGAAGAACTCGTGGTGACGAAAGAGGAAATGGAGATGTATGTTGATCTTCATCCTCTCACCAACACAACACCTTATACTGTGATGGAAAGCATGTCAGTGGCCAAAGCTTTGGTGCTCTTCAGGACAGTGGGCCTACGCCATTTGCTCATTGTACCGAAATACGAAGCAGCCGGGGTTCCTCCTGTAATTGGCATTCTGACCAGGCAGGATTTTATACCATACAACATTCTGACTGCCTTCCCTAATCTGGCAAGAGCAAAGGACAATGACAAAGGGAACTGA | 2355 | 44.37 | MEENLVPYVEPEAQEEERDQRDPESNPLNEPLLKRSRTLSSNPLAIVGTKVSLIESLDYEINENDLFKHDWRRRSKVQVLQYIFSKWTLAFLVGLLTGIIATLINLAIENIAGYKLLRVVEYIAQERYLMGFVYFTTANFLLTFVAAVLCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWTWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSSLLWRNFFSTAIVVVILRTFIEVCKAGQCGLFGQGGLIMFDVSSVSVSYHVMDIIPVAIIGLLGGFLGSLYNHFLHKVLRLYNLINQKGRMHKLLLALAVSIFTSVCQYTLPYLAQCTPCNPSLPASVCPTNGRSGNFKQFNCPKGYYNDLATLLLTTNDDAVRNIFSVNTPQEYQPLSLVIFFILYCILGLITFGIAVPSGLFLPIILMGSGYGRLIGLLMQPYTNLDQGLLAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPMTMIVLLIAKTVGDSFNPSIYEIILHLKGLPFLDANPEPWMRNITVGELADAKPSVVTLRGLEKVSRIVEVLKNTTHNGFPVVDADAVVPPVGMAVGATELHGLVLRAHLLQVLKKKWFSRERRRTEEWEVREKFTWVELAERESKIEELVVTKEEMEMYVDLHPLTNTTPYTVMESMSVAKALVLFRTVGLRHLLIVPKYEAAGVPPVIGILTRQDFIPYNILTAFPNLARAKDNDKGN | 784 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 12356876 | 12360085 | - | evm.model.ptg000021l.934 | HCH13g0934 | 557439 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g0934 | 784 | ProSiteProfiles | CBS domain profile. | 711 | 776 | IPR000644 | - | |
| HCH13g0934 | 784 | PRINTS | Chloride channel signature | 526 | 545 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH13g0934 | 784 | PRINTS | Chloride channel signature | 155 | 172 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH13g0934 | 784 | PRINTS | Chloride channel signature | 564 | 578 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH13g0934 | 784 | PRINTS | Chloride channel signature | 186 | 205 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH13g0934 | 784 | PRINTS | Chloride channel signature | 508 | 524 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH13g0934 | 784 | PRINTS | Chloride channel signature | 476 | 496 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH13g0934 | 784 | PRINTS | Chloride channel signature | 250 | 269 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH13g0934 | 784 | CDD | ClC_6_like | 55 | 577 | - | - | |
| HCH13g0934 | 784 | Gene3D | - | 585 | 769 | IPR046342 | - | |
| HCH13g0934 | 784 | FunFam | Chloride channel ClC3 | 78 | 394 | - | - | |
| HCH13g0934 | 784 | Pfam | Voltage gated chloride channel | 143 | 557 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH13g0934 | 784 | PRINTS | Plant CLC chloride channel signature | 271 | 279 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH13g0934 | 784 | PRINTS | Plant CLC chloride channel signature | 303 | 310 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH13g0934 | 784 | PRINTS | Plant CLC chloride channel signature | 60 | 68 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH13g0934 | 784 | PRINTS | Plant CLC chloride channel signature | 285 | 295 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH13g0934 | 784 | PRINTS | Plant CLC chloride channel signature | 428 | 444 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH13g0934 | 784 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 597 | 765 | - | - | |
| HCH13g0934 | 784 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| HCH13g0934 | 784 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 30 | 765 | IPR051280 | GO:0009671(PANTHER)|GO:0009705(PANTHER)|GO:0043231(PANTHER) | |
| HCH13g0934 | 784 | SUPERFAMILY | Clc chloride channel | 64 | 579 | IPR014743 | - | |
| HCH13g0934 | 784 | Pfam | CBS domain | 712 | 763 | IPR000644 | - | |
| HCH13g0934 | 784 | SUPERFAMILY | CBS-domain pair | 581 | 763 | IPR046342 | - | |
| HCH13g0934 | 784 | MobiDBLite | consensus disorder prediction | 11 | 25 | - | - | |
| HCH13g0934 | 784 | Gene3D | Clc chloride channel | 77 | 579 | - | - | |
| HCH13g0934 | 784 | SMART | cbs_1 | 599 | 659 | IPR000644 | - | |
| HCH13g0934 | 784 | SMART | cbs_1 | 714 | 767 | IPR000644 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0802 | HCH-Chr11:38434645 | HCH13g0934 | HCH-Chr13:12356876 | 6.50E-231 | dispersed | |
| HCH13g0934 | HCH-Chr13:12356876 | HCH6g1601 | HCH-Chr6:49180183 | 7.20E-161 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g0934 | K05016 | - | csv:101210008 | 1392.1 |