Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0934 ATGGAGGAAAATTTAGTCCCTTATGTTGAACCAGAAGCTCAAGAAGAAGAAAGAGATCAAAGAGACCCAGAAAGCAATCCATTGAATGAACCTCTCCTCAAAAGAAGCAGAACCCTCTCATCCAATCCTCTTGCCATTGTTGGAACCAAAGTTTCCCTTATAGAAAGCTTGGATTATGAGATCAATGAAAATGATCTCTTTAAGCATGATTGGAGAAGAAGATCAAAAGTTCAAGTTTTGCAGTATATATTCTCTAAATGGACATTGGCTTTCCTTGTGGGGCTTCTTACTGGTATTATTGCTACTCTTATCAATCTTGCTATTGAAAATATTGCTGGCTACAAGCTTTTGAGAGTAGTTGAGTATATAGCTCAAGAAAGGTACTTAATGGGGTTTGTCTATTTTACCACTGCAAATTTCCTTCTCACTTTTGTTGCTGCTGTTCTCTGTGTATGCTTTGCCCCAACCGCGGCGGGGCCTGGCATACCCGAAATCAAAGCTTATCTCAATGGTATAGATACTCCTAATATGTTTGGTGCTACAACATTGATTGTTAAGATCGTTGGAAGTATTGGAGCTGTCGCTGCTGGCCTAGATCTTGGGAAAGAAGGACCTCTAGTACACATTGGCAGCTGCATTGCATCCTTACTTGGCCAAGGGGGTCCCGATAATTATCGTGTGAAATGGACCTGGCTACGTTATTTCAATAACGATCGTGATCGTCGGGATCTTATCACTTGTGGATCGTCTTCAGGAGTTTGTGCAGCTTTCCGAGCTCCTGTTGGCGGTGTTCTATTTGCTCTTGAAGAGGTGGCTACTTGGTGGAGGAGTTCCCTCCTCTGGAGAAACTTTTTCAGCACAGCCATTGTTGTCGTTATTCTAAGAACTTTCATCGAAGTATGCAAAGCAGGCCAGTGTGGGCTTTTCGGACAAGGAGGGCTTATAATGTTTGATGTTAGTAGTGTTTCTGTTAGTTATCATGTTATGGACATTATACCAGTTGCTATCATTGGCCTCCTTGGTGGATTTCTGGGAAGCCTTTACAATCACTTTCTGCACAAAGTCTTGAGGTTGTACAACCTCATCAATCAGAAGGGAAGAATGCATAAACTCCTACTTGCCTTGGCAGTTTCAATCTTCACTTCAGTGTGCCAATACACTCTCCCCTATCTTGCTCAGTGTACACCGTGTAACCCGTCTCTTCCAGCGTCGGTCTGTCCCACCAACGGTCGGTCTGGCAACTTCAAGCAATTTAACTGTCCAAAGGGTTACTACAACGACCTAGCAACCCTTCTTCTTACCACAAATGATGATGCTGTTCGAAATATATTCTCAGTTAACACTCCACAAGAATATCAACCCTTATCCCTCGTAATCTTCTTCATACTTTATTGTATCTTGGGATTGATTACCTTCGGCATTGCTGTGCCGTCTGGACTCTTCCTCCCCATCATCTTAATGGGTTCTGGTTACGGTCGCCTAATTGGCCTTCTTATGCAACCTTACACGAATTTAGATCAGGGGCTCCTTGCCGTTCTTGGTGCAGCCTCACTAATGGCTGGCTCAATGAGGATGACAGTTTCACTTTGCGTCATATTCCTTGAACTCACCAACAATCTTCTCTTGCTTCCCATGACAATGATTGTCCTTCTGATAGCAAAAACAGTAGGAGACAGTTTCAACCCAAGTATCTATGAGATTATTCTACACTTAAAAGGCCTTCCCTTCTTGGATGCAAATCCAGAGCCTTGGATGAGAAACATCACGGTCGGAGAACTTGCTGATGCTAAGCCGTCAGTAGTGACACTTCGCGGATTGGAAAAAGTATCACGCATTGTAGAAGTCCTGAAGAACACCACACACAATGGTTTTCCTGTCGTGGATGCTGATGCGGTCGTGCCACCGGTGGGAATGGCTGTTGGAGCAACAGAACTTCATGGACTAGTCTTGAGAGCTCACCTACTTCAGGTGCTGAAGAAAAAATGGTTCTCGAGGGAGCGAAGGAGGACGGAGGAATGGGAAGTGAGAGAGAAATTTACTTGGGTTGAACTGGCTGAGAGGGAAAGCAAGATCGAAGAACTCGTGGTGACGAAAGAGGAAATGGAGATGTATGTTGATCTTCATCCTCTCACCAACACAACACCTTATACTGTGATGGAAAGCATGTCAGTGGCCAAAGCTTTGGTGCTCTTCAGGACAGTGGGCCTACGCCATTTGCTCATTGTACCGAAATACGAAGCAGCCGGGGTTCCTCCTGTAATTGGCATTCTGACCAGGCAGGATTTTATACCATACAACATTCTGACTGCCTTCCCTAATCTGGCAAGAGCAAAGGACAATGACAAAGGGAACTGA 2355 44.37 MEENLVPYVEPEAQEEERDQRDPESNPLNEPLLKRSRTLSSNPLAIVGTKVSLIESLDYEINENDLFKHDWRRRSKVQVLQYIFSKWTLAFLVGLLTGIIATLINLAIENIAGYKLLRVVEYIAQERYLMGFVYFTTANFLLTFVAAVLCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWTWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSSLLWRNFFSTAIVVVILRTFIEVCKAGQCGLFGQGGLIMFDVSSVSVSYHVMDIIPVAIIGLLGGFLGSLYNHFLHKVLRLYNLINQKGRMHKLLLALAVSIFTSVCQYTLPYLAQCTPCNPSLPASVCPTNGRSGNFKQFNCPKGYYNDLATLLLTTNDDAVRNIFSVNTPQEYQPLSLVIFFILYCILGLITFGIAVPSGLFLPIILMGSGYGRLIGLLMQPYTNLDQGLLAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPMTMIVLLIAKTVGDSFNPSIYEIILHLKGLPFLDANPEPWMRNITVGELADAKPSVVTLRGLEKVSRIVEVLKNTTHNGFPVVDADAVVPPVGMAVGATELHGLVLRAHLLQVLKKKWFSRERRRTEEWEVREKFTWVELAERESKIEELVVTKEEMEMYVDLHPLTNTTPYTVMESMSVAKALVLFRTVGLRHLLIVPKYEAAGVPPVIGILTRQDFIPYNILTAFPNLARAKDNDKGN 784
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 12356876 12360085 - evm.model.ptg000021l.934 HCH13g0934 557439
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0934 784 ProSiteProfiles CBS domain profile. 711 776 IPR000644 -
HCH13g0934 784 PRINTS Chloride channel signature 526 545 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0934 784 PRINTS Chloride channel signature 155 172 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0934 784 PRINTS Chloride channel signature 564 578 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0934 784 PRINTS Chloride channel signature 186 205 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0934 784 PRINTS Chloride channel signature 508 524 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0934 784 PRINTS Chloride channel signature 476 496 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0934 784 PRINTS Chloride channel signature 250 269 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0934 784 CDD ClC_6_like 55 577 - -
HCH13g0934 784 Gene3D - 585 769 IPR046342 -
HCH13g0934 784 FunFam Chloride channel ClC3 78 394 - -
HCH13g0934 784 Pfam Voltage gated chloride channel 143 557 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g0934 784 PRINTS Plant CLC chloride channel signature 271 279 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
HCH13g0934 784 PRINTS Plant CLC chloride channel signature 303 310 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
HCH13g0934 784 PRINTS Plant CLC chloride channel signature 60 68 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
HCH13g0934 784 PRINTS Plant CLC chloride channel signature 285 295 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
HCH13g0934 784 PRINTS Plant CLC chloride channel signature 428 444 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
HCH13g0934 784 CDD CBS_pair_voltage-gated_CLC_euk_bac 597 765 - -
HCH13g0934 784 MobiDBLite consensus disorder prediction 1 32 - -
HCH13g0934 784 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 30 765 IPR051280 GO:0009671(PANTHER)|GO:0009705(PANTHER)|GO:0043231(PANTHER)
HCH13g0934 784 SUPERFAMILY Clc chloride channel 64 579 IPR014743 -
HCH13g0934 784 Pfam CBS domain 712 763 IPR000644 -
HCH13g0934 784 SUPERFAMILY CBS-domain pair 581 763 IPR046342 -
HCH13g0934 784 MobiDBLite consensus disorder prediction 11 25 - -
HCH13g0934 784 Gene3D Clc chloride channel 77 579 - -
HCH13g0934 784 SMART cbs_1 599 659 IPR000644 -
HCH13g0934 784 SMART cbs_1 714 767 IPR000644 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0802 HCH-Chr11:38434645 HCH13g0934 HCH-Chr13:12356876 6.50E-231 dispersed
HCH13g0934 HCH-Chr13:12356876 HCH6g1601 HCH-Chr6:49180183 7.20E-161 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0934 K05016 - csv:101210008 1392.1