Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0940 ATGAAGATGGAATTGTGGAGAGTATTGTTGTTGGCAGTGATGGTTCTTATGAACATGGAAGCTGGCGAGGGAATGTTAATGAAAAACTTCTACAACGCAACTTGTCCAAACGTGGAAGCCATTGTTAGACAAGCTGTAACTCAAAAGTTTACACAGACCTTTGTCACAATCCCTGCAACACTACGTCTCTTTTTCCATGATTGCTTCGTTGAGGGATGCGACGCTTCAGTTTTAATTGCAACAGCAAACGGAGACGCAGAGAAAGATGCAGCAGACAATCTTTCCTTAGCAGGAGATGGATTCGACACTGTCGTTAAAGCAAAGGAAGCTGTGGAGGCCGCCTGCCCTGGAGTAGTCTCATGTGCTGACATATTAACCATTGCCTCCAGGGATGTCGTTGTCTTGGTTGGAGGTCCCACTTTCTCTGTCGAATTAGGACGCCGGGACGGAATGATATCGAAAGCTTCCAACGTCGCCGGAAACTTGCCAGAGCCAACCTTCAACGTCAGCCAACTGAATGCCATATTTGCCAAAAACAATCTTACACAAACTGATATGATTGCTTTATCCGGAGCACACACCGTTGGCTTCTCTCATTGCGACCGCTTTGCGAACCGGCTGTACTCATTCTCTCCGTCGTCGCCGGTGGATCCTTCACTTAATCGGAAGTATGCTAAGCAGTTAATGGAAGCTTGCCCTGAGGATGTAGATCCTAGAATAGCTGTGAACATGGATCCTGTAACCCCAAGGAAATTCGATAATGTTTATTATCGAAACCTTGTCACCGGAAAGGGGTTGTTTACTTCTGATGAGGTGCTTTTCATTGATTCCTTGTCGCGGTTCACTGTTAATACTTTTGCTAGTAATCGTAAAGCTTTTAATGTAGCATTCACTACAGCGATGGTGAAGCTTGGGAGGGTGGGAGTTAAGACAGGGAACTTAGGGGAGATTAGAAGAGACTGCACAACCTTCAATTCTTGA 981 45.57 MKMELWRVLLLAVMVLMNMEAGEGMLMKNFYNATCPNVEAIVRQAVTQKFTQTFVTIPATLRLFFHDCFVEGCDASVLIATANGDAEKDAADNLSLAGDGFDTVVKAKEAVEAACPGVVSCADILTIASRDVVVLVGGPTFSVELGRRDGMISKASNVAGNLPEPTFNVSQLNAIFAKNNLTQTDMIALSGAHTVGFSHCDRFANRLYSFSPSSPVDPSLNRKYAKQLMEACPEDVDPRIAVNMDPVTPRKFDNVYYRNLVTGKGLFTSDEVLFIDSLSRFTVNTFASNRKAFNVAFTTAMVKLGRVGVKTGNLGEIRRDCTTFNS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12601632 12603605 + evm.model.ptg000021l.940 HCH13g0940 557445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0940 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
HCH13g0940 326 Pfam Peroxidase 42 289 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 Gene3D - 29 325 - -
HCH13g0940 326 Gene3D Peroxidase, domain 2 163 304 - -
HCH13g0940 326 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 ProSiteProfiles Plant heme peroxidase family profile. 25 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 CDD secretory_peroxidase 26 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH13g0940 326 SUPERFAMILY Heme-dependent peroxidases 27 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 FunFam Peroxidase 29 174 - -
HCH13g0940 326 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g0940 326 FunFam Peroxidase 163 304 - -
HCH13g0940 326 PANTHER - 12 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0794 HCH-Chr13:7615056 HCH13g0940 HCH-Chr13:12601632 1.70E-71 dispersed
HCH13g0940 HCH-Chr13:12601632 HCH14g0352 HCH-Chr14:32436022 4.80E-119 dispersed
HCH13g0940 HCH-Chr13:12601632 HCH13g0941 HCH-Chr13:12695733 6.70E-129 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0940 K00430 - cit:102612835 476.863